RNA id: AMCG00003297


Basic Information

Item Value
RNA id AMCG00003297
length 1787
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00003297
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17817539 ~ 17823740 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCGATAGACAGGTGTTCAATTAGCGGGAGAGACGAGCGTAGTTAGGATAGACCTCTGATAActtgatattttttaattaacctgtCATACAGTAACATTGTATGGTCTATTagaattaagttttaaaatggaGTTTATGATGGAAATCCTAATTTTCACCTATTTTCTAATTTCTGAAACAGtagttAAAGCAAGACCTGTTCGGAGAGATTCCAGGACTTTTCAGATAAGTTTggattcaaaagaaaacaaggatGAAATCATTGAAATTAACCGAGGTTTACTAAAGGACAAAACGTCAAGCCAGATACCTCTGATGGAAGGTGATATCATATTAGAAgAAACCCGAGGTTCGGACACCCTCATCAAATGGCCCAAATCTTCTGATGGCCTTGTGCGAGTCCCATATGTCCTTTCCAAGTCTTATAGGGGTGAACAGGTTGTGTCCCTGAATGATCTGTGCCTGTCCGTTGAGGGAAACGGCACAGTGCAGCACGAGCTCCTTCATGTGCTGGGCTTCTGGCATGAACACTCCCGCAACGATCGCGACTCATTCATTGACATCATCTGGTCTAATATTTGGTTAGGGTATTCATTCAATTTTCTTACCAGAGAAACCAACAGTCTTGTACCGTATGACTATGGTTCTGTCATGCACTATTCACCGTTGGCTTTCAGTATGAACGGCAACCCAACTATTGTCCCCAAAAGTAAAAGTGCAATGATCGGACAACGGACTAAACTGAGCCGATTGGACATCCAGAAAGTGAACCTGCTCTACGAGTGTGCCAAAGTATCTGTTCCAGACAATGTATCCACACTTAAAATGGCAATAAAGACTGCTGTAAACAAATGGATCGACTCGGCCGTACCCAGTTTGGAAAATGACCGGGCTGGCTGTGCTCCAGTGGAGGCCTCTCTCTGTGATTTCGAGCACGGGCTCTCTGGATGGGAGCTGAACACTGCTGTCTGCAGATGGACTGTGCACAGGGGTCCCACGCGCTTTTTAGCCACAGGACCTGAACGCAATGTCACACTGCATCGCTGCAGTGCACAAAATGAAGGGTCTGCATCTCTTAAAGTATACAAGCGGTCATCTGCAGGAACTGAACTCCTCTGGACAGCAAAAAATGGCACAAGGTGGAGTTTTGAGAGCGTCCGCATTCTCTCTGATGTGTGTGATACCTACCAGGTTGTCTTTGAGGGAGTAACTGACAGTCCCTCAAGTGAAGCTGCTATTGATGATGTACGTGTCCAGACAGAATGTTACGTCTATAATGAGATAATTGAAGCTCCTTGTGACTGAAAATAACCTGGGCTACTCACCTGAGAGAGTGGCAAGAGAGAAAGTtgtgaatgcaaaacaaaatcaatttgcATAATAAATCGGTTACTTTCTAACTTGTTAACAAagttgtggtttatttttaaacaaattgtgaaaaatagTATAGTTGGCCAATTAGTTGTTTTTCcataaaatattgattgataCACTTCAGACCATTGAATTATATTGAGTGACCTTTCACAGTTCAGTCAATTTGGAATCTGTTTTCTCTGGGCTGAATTGGACTTCAGTGAGTTCTGAAAAGATGCAACTATACAACTATAGTGTTTTGGACTATTTATTTAAGCCAAAATCTAGAATGCATTAACATAAagaacagACTGCAGTTTGTCTTGCATAAACTAAGATGGAACAGTTGTTAAGATTGTTCAAATTCTAAGCATTACAAGCTGTAAGAATTATTGAGTTGGTGACATTTTAAGTATTCTTTCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 879493 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 898039 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1161372 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1319098 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 463263 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 480891 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 482622 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1011800 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1724901 19548641 ~ 19548932 (-) True G142176
AMCG00003293 mRNA downstream 46189 17747289 ~ 17771350 (-) True AMCG00003293
AMCG00003294 mRNA downstream 74633 17726060 ~ 17742906 (-) True AMCG00003294
AMCG00003292 mRNA downstream 114557 17688413 ~ 17702982 (-) True AMCG00003292
AMCG00003290 mRNA downstream 139693 17676623 ~ 17677846 (-) True AMCG00003290
AMCG00003289 mRNA downstream 360034 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003298 mRNA upstream 2194 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003296 mRNA upstream 26040 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003299 mRNA upstream 79561 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003300 mRNA upstream 101172 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003304 mRNA upstream 116131 17939871 ~ 17970610 (-) True AMCG00003304
TU178404 other downstream 1069108 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2700022 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3143119 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4387215 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1719908 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1729131 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1731703 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1741655 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1743173 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile