RNA id: AMCG00003300


Basic Information

Item Value
RNA id AMCG00003300
length 345
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00003300
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17924912 ~ 17926983 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGAGAAGCGAAAGGCAAACGCGGGAGCTGAAAGCCGAGGAGGTGTTTCTGGAGTCCGACACTTCCATGGATCAGCCAGATTTTGCCGAGATGTCCAActgtccttttaaaaacatcttcCACTCCGAGGACTCTGCTCTGGACCAGATCGACACTTTTCTGAAAAACGTGCAAGTGTTGCTGGAGGCAGCAAGTTACATAGAAAACAACGAGAAGAAAGATGgaaGAGCCTCACATGGTTTCCACATGGAAACAAACTCGGCTCTTCTGATTGGACAGCCGAGAGGTTGCTGGTTGCCCTTACCAGCCGTCACCTCCAATCATACTCGGGCTGCGCTTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 986866 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 1005412 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1268745 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1426471 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 360020 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 377648 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 379379 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 908557 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1621658 19548641 ~ 19548932 (-) True G142176
AMCG00003299 mRNA downstream 18504 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 68392 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003298 mRNA downstream 79674 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003297 mRNA downstream 101172 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003293 mRNA downstream 153562 17747289 ~ 17771350 (-) True AMCG00003293
AMCG00003304 mRNA upstream 12888 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003303 mRNA upstream 148944 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003307 mRNA upstream 915323 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003310 mRNA upstream 1121693 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 1155368 19082351 ~ 19120849 (-) True AMCG00003309
TU178404 other downstream 1176481 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2807395 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3250492 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4494588 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1616665 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1625888 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1628460 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1638412 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1639930 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile