RNA id: AMCG00003303


Basic Information

Item Value
RNA id AMCG00003303
length 1540
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00003303
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18075927 ~ 18078987 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATTTGAGCTTTTCCAATGGCAACATGAGCGGTAACGTCAGTGCTACTGCGTCTGTCCTCACTCCCAATAGAAATGCCAATCTGGAGACAACCAACAGGGATCTGGATGATGCTATCTATGAATTCAAAGTCTTTAACATCACTGTGACCTCCCTAGCCCTGTGTATCCTGATCTTCACTGGGATTTTCTGCAGCGTCTCTTATCACAATCGAAGGAGGCAACACAGACAGGCCAGGGCATACGAGGACACTGTGGCCCGCGAGAACCTAAAGAGCCCGGTGGACATCAAAGCGGTGAAGAGGACCCACAGCCTGCGTAACCCATTATCCTGGCTGAGAAGGCAGGACACGTACAAGGAGAACTCCCAGATCTACTTCATATACAGCAACCCTCTCGCCACCGCTGAAGACAGCGTGGTCACCACTGAGGGAGAGCCGATTGTCTTCGAGAACATGCTAATGCAAAGCGATAGCCTCAAAGATACCGCAGGAGGTATCATTCTTGACCCGTCCACATTTTATATGCAACTGTAGGATACAATtaggatagatagatagatagatagatagatagatagatagatagaggcTTGTTGCCATCAAATAGTGTGGAAAACACTTCCAACACATATTTCCTTCAGTGCTCTCTAGTGTCAAAACAATTGACAACAGCACAATGCTTGACAAAGCATGAGGGAAAAAGCAATCTCAAATATTCTCTTAGCTCCCTGAGCCTACACAACATGGGCTGTGAGAAGCTGGAACAGCAAGtgtcttttatttctttcttttttttcaatattaggTTCAAAGCTTTTTGAACCACCCTCATGCATTTGTGAAATGGGACTTTGgttcatacatgcatacactGGTATATTTCTAAAGCAGAAGAGCAAAGTggaattttttaaattttaaatattttaaatccaagTGTTATTATactgacaatttaaaaagccTGAACCTATTACTATTATGAATAGGAAACATGTAAGATAATAGGTGGGACTGAGGATTGTGAAACAGTCACAGATGTAATAACCCAAGATGTAATGACATTATGGCAGCTAATTGAATATCCAAGATTTCTGTAAAAAGTGTACATACAAAGGAAATAGAATAAGTCTCTTATCTGACACAGTTTAGTGTGCTTTTAATATAACccataagaaaatattttagttttttacagaATGGTTTTTAACAGGTGCATGTTAGTTTCCCCTGTTAACCTGTGGAGagcaacatgttttaatgtggATAATACATAAGAAGTACTACAAATAATACTTGACTACATCtagtttgttaatttatatgTTCTTGGAAGCTCTACTTATTGGATATGTGAAGAAACTGCTCATATTTCACAtgacaaataaatactgtatgttcttttgtaaacatttttcttgttcttcCACCTCATTCAAGTACTCCTGAACTACACAATCTCTAAATTCAACTATCTGAACTATGTCCTCAGCAAGACTAATAAATACCAACAAAGTgtaattgactttttttctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 1137881 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 1156427 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1419760 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1577486 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 208016 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 225644 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 227375 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 756553 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1469654 19548641 ~ 19548932 (-) True G142176
AMCG00003304 mRNA downstream 105317 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 148944 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 169519 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 219407 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003298 mRNA downstream 230689 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003307 mRNA upstream 763319 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003310 mRNA upstream 969689 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 1003364 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 1041873 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 1152824 19231811 ~ 19254717 (-) True AMCG00003313
TU178404 other downstream 1327496 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2958410 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3401507 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4645603 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1464661 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1473884 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1476456 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1486408 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1487926 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile