RNA id: AMCG00003304


Basic Information

Item Value
RNA id AMCG00003304
length 6374
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00003304
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17939871 ~ 17970610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttgttccaggTGAAGATACAAGTCAGAAAAGAGCAGTGAAGCATGAGTACAGAAGCTAGTCAGGGGGTGGTGacaacccctcccccacccaGCTTGGGCCACAAAGAGGGCTACTTTGACCGTATCAATGAAAATGACCCAGAGTACCTCCGTAGCAGGAACATGTCGCCTGACCTGAGGCAGGATTTTAACATGATGGAGCAGAAGAAGAGAGTCACTCAGATTTTGCAGAGTCCAGCCTTCAAAGATGAGCTGGAGGGCCTCATCCAGGAACAGATGAAAAAGGGAAACAACCCCACGGGGCTTCTGGCTTTGCGGCAGATTGCAGACTTCTTCATGGCGAGCTCGGTCGCAGGTTTCTCCACGTCCCCTCTTAGCCTGGGGATGGTAACTCCTATCAATGACCTGCATGGAGTGGAGTCTGCGGGTTTTGTTAAAGGGGAGAAGCAGACCCGCTGCAAACTGGCCAGCTTGTACAGACTCATAGACCTCTTCAGCTGGGCCCACTTTGCCAGCTGCTACATTACAGTTAGGGTCAGCAAAGAACAAGATCATATTCTTATTCTTCCCAGGGGGTTGTCCTTTGCTGAAGCCACCGCAGCAAACTTGATGAAAGTGAATATCATTGGGGAGGTTGTAGACCAGGGCAACACCAACCTGAATATTGACCTTCCTGGGTTCAGCCCCCACTCGGCCATCTACTCCATGCGCCCAGATGCCCGGTGTGTCATTCACATTCACACCCCTGCAGCCGCTGCCGTTTCATCTATGAAGTGTGGCATTCTCCCCATCTCCCAAGAGGCCCTCATTCTTGGAGATATTGCCTACTACAATTACCAGGGGTGCCTTGATGATCAAGAAGAGAGGATTGAGCTGCAGAAAGCTCTTGGCCCATCTAACAAggtgCTGGTTCTGAGAAACCATGGAGTGGTTGCTCTTGGAGAATCCATAGAAGAGGCCTTCCATTATGTTTACACTGCCCAAATGGCATGTGAAATCCAGGTAAACGCGCTGTCGTGTGCCGGTGGAGTGGACAACTTGATAGTCCTGGACCTGGAGAAGTACAAGCCATTGACTCAAGGGGTGGCATTGGCTGGAATAAACATGGGCTCCCAGACCAAATGGAAAGCGGGTGAATTGGAGTTTGAGTCCCTCATGAGGATGTTGGACAACCTTGGCTACAGAACCGGCTATGCCTACAGGCACCCCATAGTGAGAGAGAAGCCCCGACACAAGAGCGAAGTGGAGATCCCCGCCACTGTCACCGCTTTCATGTTCGATGACGACGAGATGATGGCACGTTCCCCCTTTAAGTTCCTGTCCCAGAGGCAACAGCGTGAGAAGACCAGGTGGCTGAACTCACCCAACACCTACATGAAGGTGAACGTGCCCGAGGCGTCGCAGAATGGGGAGAGTAGCCCCCGGACTAAGACGATGTGGATGAAGGCAGAAGATGCGGCTACCTCCATCAGAATCGAAGACCCCAATATGTTTGTCCCTCTCAACACAAACCCCAATGAGGTGCTGGCCAAGAGAAACAAGATCAGAGAGCAGAACAGGTTTGACCTGATGACAGCAGGACCCCAGTCCCAGCTACTGGCTGGCATTGTGGTGGATAAGAAGCCAGGACCACCCTTCGTGATTCCTGATGATGAGCTGATGGGTCCACTCCCTCCCAACCCCTTCAGCCAGCTGACCgagagagagctggaggagTACAAGAACGCCGTGCAGCGCCGACAGCAGGGGTTTGAGGAAAACCACAAGGACCCCCAGGGAACGCCGGTGGTGATTCTGAACGGGAAAGACGACCTGCATGACGTGGAGGAGGACCTGAGCAAGAGGGTGAGCCAGCTGACCACCAGCACGGTGGAGAGTGTGGAGATCACCATCAAACCAGGGGAGAAGATCGAGGAGACCCTGTCCCCAGAGAGCTCGCCCTCCAAATCGCccaacaagaagaaaaagaagttCCGCACGCCCTCGTTCctcaaaaagaacaaaaagaaggaGAAGGTCGAGGCCTAAGGCCAACATGGATCAGTTTTCTTCAgctctaattttattttttcccccttaagaaatttacctttaaaataaaaatgacactgcacatttaaaacacaaaggaaagaaaaaacaaaacacgaaaTTGGTCACATGAGTTAAGAATTATGTTCGGGGGTTTGGAGGGGAAAGGGGGAGGAGTTTTTGAATTTCTTGATGAGAGCCAAAATGAAGTAAGTCCTAGAAAACTGGCTCCTCTTAATTGAAGTCTTTTCTGCCAAGGGCTGATATGAATTCTATAGATTTCTCTCCTAATTTTGGTATTGATGTTAAAGTGTGGTGGGTGACCATAAAAACAAAGGTGCCAGACATCAGCTGTGTTTGACTGACTGCCCGTCCTTTTTGTTGCATAATGAAGATCTTTTcttgggttttttgtttttttttttttttgtctccactTGGATGCTGTGGTCACTTTATGTTCAGTCCACTAGTTCCTGGAACCGTTAACTGCATTAGGAATGCCATACCAAATAAGTGACTGCCACACTGGAAACTAACAGTTTATCACTAATTACAGGGTTTCTGAAACCAGTTCAAGATTAATGGGTCTATACTTATTTGGGTCTGTACAGGTTGTCCTTACTATATATGCATGCCTGtaccttatttttatttaattttccagaGAAGCTAATAATTCTGCACTGACTCAATTGTTGGAGAAACCTGTGTAGTTTCATTGGGAGCCTTTCTTCAAAGTACACATTTTGTTCCATATTAGTTACCTATTTTTATTCTTGCCAaaaggaggaggggaaaaaatcaCGTTTTAGTGAATCACAATCTCGGAAAATGTCATCATTGTAACTTGTaggttttaattgcatttacattttgagaactgaaaagaaaaaggaatcatctcatttgaataaaatcttttttattctaaatctaaatctggTATTAGTCCAATCAGTTTTATACTCATTTCTATACCGTTACATACAAATGTCAAGCATGTTTTGCAAGAATCTAAATTCCTAGAGCTGAAAATCTAGTAATGCCTGATTTCTCAGTTATATAGTATTGTTACTGGTATTGTAGCTCAGATTACTAAAACAAATAGAGGCGATTATATTAAAAACTGGATTTTGTggttatagatttttttttttttttatatttttttttacttttactgcaCTTTTCTTGTGGTATATAACAAATCCTACAGACAGGTGTTCAGACATTTTACCAAAATGAAGGAGAATTAAATGAGAAGGGAAAAGTTGTGGTATGGTGAATAGAGAACAGTCTACGTATGGTGTGCGTTTTAGGTTTTGAAAGTGAAGTCTTGTCCGTCAGTGGTTTATCTTaaagacatttgaaatatatacatgtatataaatacacatttggtaaataaaatagaattacTTCCAGGGGttaattttatttggccattgtTTCAGTCCTCCTCCACTTTCAATTctgcattttgacagtgaaACGGTTGTAAGCTTTATACCCACATGGAAAATGTAAAGGGCATTACTGAAAGCGCCAAGTCTAAGTTCCCAATTTTATGCAGAGAATGCCAATCACTCCAAAAGTAAGTCTCTACTTGGatgagagaggggagaggtCGGAAAGCAACCGCTTCCGGACCCTGAGAGAGCACTGGGGCCTTGTTTGCAGTGCAGGCTTGTTAACGGCACCCTGTGACTGACACCTGACTCAGACCTCAGcgaggtgggggggggcgggttTGAGTGAAATGAAAGACAGCTGTTTGACCTTGGAATCCTTCTGGTACCAGCCACGGATTTCTACATCCTTCGCTTGAGCATCAACACAGCTGCTTCCTGAGTTTAGGTTTCCTCGTCATCCGTTACATTTCAAACAGGGCAGCTGTTTGGGATTCTTGGGAGCCTTTTCTGTCTGTGGTGGgagtatgatttttttttttttccgggAGGTCACCCATGCAGGCCTCCAGTCAATCTGCCATGGTGGGGAGCTTAAAATGTTAACTGGCAAATATGTATCCATGCTTTTGTTTATCTAGGGTTACCTGCATGCCCACCTTTTGTACTCTTCTCCAGGTTTATCACTTTGTCTGGcttctggttttttttttttttcctcatgtaCTCCTTGTATGTGTAACTAGATATGTTCGGTGAGGTTTGTCATAGTTTAGTGGGATGTACAGTAACCTTTCTACATGcataaagcagcatttttatttttcttgttgattTGGATCATGTCTGACACCAAgacaaaagttaaataaataaataaaaaatggagtGACCCATTACAGGCCGTGAGCAAATGGATACCAATATCCCAGCTAGCaatgtgaattattttctttggcaGGAGGCAAGAGGCACATTCAAACTTTGTATATAGCATGTGGATCAGAGTTGGGCTGggtttggaaaacaaatacgaAAGCTGGAGAGGGATGCAAGTTTCAGAAGGAGAAATTAACTAATactggaagaaattaaaacgTTTAtcttttattgttcattttgtgcTTCCTTTAGAAAACGTTCTGTGTTCAAACGTAATTCTATTTTTCCTTATttgtattacagtatattttttgAAATAGTTTTGAGCACTATGCTTTTAATAAGTTTGCAAGCATATATTTCTGATTGGATGTGTGGGATTTATTTCCCCAAACTTTTTGCACCTTGTTTTTACTAATGCCTCTTTTGTTTAACCGGCTTTGACACTTGAGCCAAGCCGCTCTGTGACCTGTGGAAAACCATATTAATGCGCATCTCATAGAGTTGCTTTTAGATGTATTGCTAATCCGTgtaaattcacaaataaaaccAGTATTTTATGGAACAATTGCCATTTTAAGTCTGTGAAATTTGGGACACGGTCTTGAATGAAAGGAGAACTCAACTAATGGtacttgtgaaaataaatgttcagttGCATTTtggttcattcattcattcacagaTTTTAGCATTGTATTGTTCCACAGTGTTTGTTGCATACCAAACACCATTTTCTTGCAATTGGCCATGCttatttgatctgtttttgtttggctCGCATGATGCTCTAAAGCTTTGTCcatactttaaatacaaacttGGTCTTTCCATCTTCAAGGTAAGACTATTGCACTTGAATGAAAGCATCACAAAGCTATTTTACACTTCACTCCAGTTAACCTTGTGTAGCATTCAATGTGTGCAGTAGAAACTAAATCTGCACACGAATACGGGAAGCCATGCTTTTAAAATTTAGCGGTCAActgatttattgaaatgtatggtATGAGGATTCTATGCAACAAGTACACAACAGTTCATGCAAAGCAATATTGAAGTATTGGGTTGGAGGCTCTATTAAAGGGGTTGTCAACAGTCGAACCTCATTCAGTTTTGCTATTCACATGCAGACTATTGCTTACCTTCTCTTATATTATTGGTAATGGAGGTGTAAGGTCTCCAATGTGTACACACTGGTTAACCTTAAATGCCAGGtttgcattaaaagaaaaatcctgATTTTGATCTCCGATACAAATCTCAGTGCTGGATATAGTGCACCATTGGAGTAGTGCTTCAATTTTACATGTACCTCTGTACTGGATTCTGAAATGGGCCAGATGGTTTTGGGCCTCGTTGGTGAAACCTAATTTGAAATAAGCCTCCATATCAAAAGCTGTTATCCAAAGAAGCAATTTGAGTTTATCAGGGGTGGCAAAGGGAACAGCCCAGAATAGGTTTTGGCAGATTTTCAAGTGGAGGATTTCCATGAATTCGGAGTTACGGTTCTATTCGCTTTGCATCGAACTACATGAGCCGAGACGTCTCGTGGCAAAGAGGCCGCGGTAAAGGTGTGCCATTGTGCCTTGACAGTTATTCCCCAGATGCACAGCACAAAATATGCACTTGCTGCATCAGGACTTTTGTATGCCACAGACCCTTGGGGGCAGGGGCGGGGTAGGGTGAAAATACTGTTAAAAAGGAGGTTCCCAATTGCCTTTCAATTAAAACCATACATCTGATttgtcaagttttttttttcttctcaaaacaTTCTTTTCCCTCCtttgtatcaaaatataaaCGCTGACTGTGCAGTGTTGACAGTTGAAATCCTACTTAACTGAATCCTCTTTTAACAAAGGCTTCTATTGctttcctaaatatatattttttaaataaatggaaataaaataatgttcctGTAAAGCATCTTAACTGCATTGAAATATTTGGTACCTGCACATGAAtgaatgtaatacaaatgtggCACTCTGTATTGCAGCTTCCTTTCTTCAaacattaaatgcatataaacgCAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K18622 ADD; adducin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 1001825 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 1020371 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1283704 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1441430 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 316393 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 334021 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 335752 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 864930 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1578031 19548641 ~ 19548932 (-) True G142176
AMCG00003300 mRNA downstream 12888 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 33463 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 83351 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003298 mRNA downstream 94633 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003297 mRNA downstream 116131 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003303 mRNA upstream 105317 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003307 mRNA upstream 871696 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003310 mRNA upstream 1078066 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 1111741 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 1150250 19120860 ~ 19129382 (-) True AMCG00003308
TU178404 other downstream 1191440 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2822354 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3265451 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4509547 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1573038 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1582261 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1584833 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1594785 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1596303 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile