RNA id: AMCG00003307



Basic Information


Item Value
RNA id AMCG00003307
length 2520
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00003307
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18842306 ~ 18888405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCAATATGTAACGTGTCGGGTTCAGGAGTGCACTGAAGCAAACAGGCAGCGTCCTTTCCTCGGATACATTGACACAAGTTCGCTTGTTGTGCAGGATGACTATGTGTTCATTCAggtTACTACTGCTGGGCGGGCCAGTTACTATGTGTCCTATCGGAGAGAGGCATTTGCACGCATCAAACTTCCAAAATATTCTCTACCAAAAGACATGCACATCATCAGCACGGATGAGAATCAGGTGTTTGCAGCCGTGCAGGAATGGAATCAGAACGACACGTATAACCTTTACATTTCGGAGACCCGGGGGATCCACTTCACTTTGGCCCTGGAGAATGTAAAAACCAGCAGGGGGCTGGAAGGAAACATCATGATCGACCTATATGAGgtagcagggataaaaggaatGTTCATAGCCAATACGAAGCTTGATAACCAAGTGAAGACCCACATCACGTACAACAAAGGCCGAGACTGGCGTCTGCTGCAGGCCCCGTCTGCAGACCTGAGGGGCAATAACATCCATTGTGTTCTGccTTTTTGCTCCCTACATCTGCAATTGCAGATTTCAGAAAATCCCTACACATCTGGAAGTATTTCAAGCAAAAACTCAGCTCCTGGGATTATAGTGGCTACAGGAAATATTGGCTCCGAGCTGTCCCACAGCAATGTGGGGATGTTCATATCATCGGATGCTGGAAACAATTGGCGACAGATTTTTGAGGAAGAGCACAGTATTTGGTTTCTGGACAAAGGAGGAGCTTTGGTAGCAGTTAAGCAGGCAACAGCACCCATTAGACACCTGTGGATCAGCTTCGATGAGGGAAAACAGTGGAGCCGGTACAGCTTCACCCTGGTGCCTCTGTTTGTGGACGGCGTGTTGGTGGAGCCCGGGACAGAAAGTCAAATAATGACgtTTTTTGGGCACTTCAGTCATCGCTCTGAATGGCAGCTTGTGAAAATAGACTACAAGTCAATATTTACTAGGAGATGCACTGAAGGCGACTACCAGACATGGCACCTACACAATCAGGGTGAACCATGTGTGATGGGAGAGAAGCAGATCTACATGAAGCGTAGGCCAGGGAACCGGTGCATGCTGGGGAAGGACTACTCCAGGATCCTGTCTGCCGAGCCATGCATCTGTTCTGCCTCTGATTTTGAATGTGATTATGGGTTTGAGCGCCGTGGGGATGGAAAGTGCTTACCTGCCTTTTGGTTTAACCCTTCTGCTGTATCCAGAAGTTGCAGTCATGGGCAAAGCTATCTTAACAGCACAGGgtACCGGAAGGTGGTGTCCAATAACTGCACTGCTGGAGTGAAGGAGCTCTATACAGCCAGGAAGCAGCAGTGTCCCAACCGTCCCCCCAGGGGCCTCCATCTCGTCACCAATGAAGGAAAGCTGACAGCCACACTGGGAGCCAACGTCACTTTCCTCGTCTTTCTAGAAGATGGTGACTCCATGAGAACAAACATCAAGTTGGATTTTGGAGATGGCATCGCTGTATCTTACTCCAATCTCAGCCTGACAGAAGATGGAATTAAACACGTCTACAAGACTGCTGGGATATTTCGAGTGACTGCTCTTGCAGAAAACAGCCTTGGGTTTGATAGCACTACCCTCTACTTACACATCACATGTCCAGTGGAGCACGTCCATCTCTCTGTTCCATTTGTGGCTATAAAGAACAAAGAGGTCAACCTTACTGCTATTGTGTGGCCAAGTCATTCAAGAACCTTAACCTACTTCTGGTGGTTTGGGAACAGCACTGAGCCGGTGATTACCTTGGAGGGAAGCATCTCATACACTTTTTTCAAAGAAGGAATGAACAGTGTGACAGTGCAAGTCTCTTCTGGGGATGTCATACTGCAGGATACAAAGACCATCGCTGTTCATGAATTTTTCAAATCGTTGCTTTTATCTTTCTCCCCCAATCTGGATGACTACAACCCTGACATCCCTGAATGGAGACAGGATGTTGGCAGAGTAATTAAGAAGGCTCTGGTACAAGTGTCTGACTTCCCAGAAGAGCAGCTTTTTGTTGCGGTATTTCCTGGTGTACCTACGGCTGCTGAGCTTTTTCTTTTGCCACACAAAAATTTAtcagaaggaagaaaaaagaatgagGCTGATCTGGAGCAGATTTCAGAGATTCTTGTCAGTGCCCTGAACCAAAACTTGGTGGAGTTTGAGTTGAAATCTGGAGTTCGAGTAATTGTGTACATCACACAGTTGACACTGGCTCCCCTTGTTGACTCCAGCCCAAGACACAGCAGTTCCGCCATGTTGATGCTCCTGTCCgttgtgtttgttggtttagccgtttttttaatttacaagtttAAAAGAAAAATCCCATGGATCAACATCTACGCCGAGGTCAACCATGAGAAAGAGCAAGAGATGATTGGCTCCGTCAGCCAAAGTGAGAGCACGCCCAAAATAACGCTGAGCGAGTTCTCCGGTCCCGAGGAGAGGCTGGAAAAGGAGCTGGAGACCAGGGGCATAGttttttttcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 4821 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 535623 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 537328 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 555094 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 1904260 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 660236 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 708924 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1292390 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1486981 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1766658 20655063 ~ 20669631 (-) True G142404
AMCG00003303 mRNA downstream 763319 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 871696 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 915323 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 935898 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003296 mRNA downstream 985786 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003310 mRNA upstream 160271 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003309 mRNA upstream 193946 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 232455 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 343406 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003314 mRNA upstream 514180 19402585 ~ 19414822 (-) True AMCG00003314
TU178404 other downstream 2093875 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 3724789 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4167886 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5411982 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 655243 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 664466 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 667038 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 676990 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 678508 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile