RNA id: AMCG00003308


Basic Information

Item Value
RNA id AMCG00003308
length 1320
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00003308
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19120860 ~ 19129382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacgGAAGAGACTGCAGAGTACCAGAGTCTTCGCTTTTTCTATTTCCAGGAAAAGGCTCCAAAGCCAGAAGATGGAGAGAATGCTTTTGAGACGCTGGAAAAGGACATCCAGGAAGTTCTCAAGGAGCTTATGGGAGATAAGAGTCTGGAAAAATTAAGGGCTGAATTCGAAAAACTACACAATGCCCTCAAGAAATCCCATGAAAGTGAAAAAAGGCTCATGGCAAAATGCAGAGAATTAAATGCAGAAATTGTATCCAACTCTGTCAAGGTTGGAACAGCATTGAAGATGTCTCAAGAGGATCAATTGACAATTACGTCCCTGAAAAAgGAGATCGAAAAGGCCTGGAAAATGGTTGATGGTGCTCATGATAAAGACCAAAGGTCAAAAGAGACGATTCAGATGCTGAAACAGGAGATTTCCAACCTAACCAAGCTTGTTGAGCAAGGAGCTGGCTTATCCATCGGCCAGGAGCACAGGCGAGAAGATATGACTAAGGAAAGAGATGGCCTTCTCACTGAAGTAGTGAATTTGCGTGAAAACTTTACGAAGGCCACAGCCAAGCTACAAGAGTCTGAAGCTTTGAATGAAACCTTAGCCGGAACTATCAGCCAACTCCAGCAGGACATCCAGGTCCGCCAGAACGAATGTTCTCGAGAGGCTCGGAGGAAGGATAAGCTGGACAAGGAGATGAAGCAGCTGCAAGCCGAGCTGGACGCTAAGCAGTCGGAAATCAAAGTGCACAATCTGCAGAGCCAGAGGAGCAAAGAGGAGCAGCAGAGACTCGAACAACAGCTGCGGGAACAGAAGATTCTCAGTGAGAGGTACGCAAAGGAGATCGAACAGCTGCAAGTCAGGAACACCAAACTGCAGCAAGATTATGAGCAGAACTCTGTGACTGTGGAGCAGTTCGCCCAGGAGAGTCAGCAGAGAGCTACAGATCTAAAGATGAAAGAGGATGAGATCAATCTGATGCGTCAAGAGAACTCAAAACTTACCAAGAGCAGAGAAGTCACCCAGAAGAAACTCCGGCAGACTGAAGATCAGAAAGTGGAaACCGAGATTGACAAGAAAGCCATTGATGAGCTGgtgcgagagagagacattttaaacaagAACATGATAAAGGCTGCCAACGCCACTCAGAAGCAGCTGAGTTTAGTGAAGCTCCACGAACAGTCAAAGAAGAATCTTGACCAGGAGATCCACAACTACAAAGAGGAAGCCCAAAAACAAAGGAAGATCATATTCcagctggagaaagagagagaccgCTATATTAATGAAGCAAGTGCTCCAGCACATGGAAGATATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 283375 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 814177 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 815882 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 833648 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2182814 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 419259 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 467947 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1051413 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1246004 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1525681 20655063 ~ 20669631 (-) True G142404
AMCG00003309 mRNA downstream 11 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003310 mRNA downstream 69687 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003307 mRNA downstream 232455 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003303 mRNA downstream 1041873 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 1150250 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003313 mRNA upstream 102429 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003314 mRNA upstream 273203 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003317 mRNA upstream 327149 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003319 mRNA upstream 355409 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003320 mRNA upstream 414255 19543637 ~ 19569532 (-) True AMCG00003320
TU178404 other downstream 2372429 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4003343 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4446440 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5690536 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 414266 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 423489 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 426061 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 436013 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 437531 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile