RNA id: AMCG00003309


Basic Information

Item Value
RNA id AMCG00003309
length 1230
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00003309
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19082351 ~ 19120849 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATCTtcgattacaaaaaaaagattgcagAAGCAGAGACAAAgctgaagcagcagcagaaccTGTATGAGGCGGTGAGATCTGACAGGAACCTCTACAGCAAGAACCTCATTGAAGCTCAAGACGAGATAACTGAAATGAAGAGAAAACTCAAGATCATGAACCACCAGATTGACCAGCTGAAAGAGGAGATCAATGGGAAGGAGTCCGCTCTGGTGAAGGAGCACCTGGAATATCAGCGgatggagaaggagaaagaggctCTCAAGGCAGAGCTGCAGAAGATGAAACAGCAGGCTCAGGAAACAAAGGAGTTCATTAACAACCAGGAAGCAGAGGAGAGAAAGTTACTCCAGATCCTAGCTGATGCTGATGCTGAAAGGACCCGACAGAAGAAAGAATTGGATCAGGTCATCAGCGAACGTGACATACTGGGCACACAACTAGTGCGCCGTAATGACGAGTTGGCGCTCCTTTATGAGAAAATTAAGATCCAGCAATCGATGCTGAACAAAGGAGAGATCCAGTATAACCAGAGAGTGGAGGACATCAGGCTGCTGAAGATGGAGATTAAGAAGCTGAGGCGAGAGAAGGGCATCTTAGGCAAAACTGTAGCCAACGTGGAAGACTTTAGACGTGAAGTATATCACATGCAAAGGGAGCTACTTAAAGAACGGACCAGGTCCAGAGCTTTGGAGGAAGAACTAGAAAACCCCATGAATGTCCATCGATGGAGAAAGCTGGAGGCCAGCGACCCAAGCACCTATGAGCTGATCCAGAAGATTCACATGTTACAAAAGAGAATGATTAGAAAGACTGAGGAGGTGGTGGAAAAGGAGCTGTTATTACAGGAGAAAGAGAAGCTGTACGTGGAACTGAAGCACATTCTGGCGAGACAGCCTGGACCTGAAGCAGCAGAGCAGTTGCAAATCTACAAGCAGATtctgagagagaaaacaaaacagctgaaGGCGTTATCATCAGAGCTGAACATGTATGAATCGCAAAGTCAAGAGTACAAATATGAGATCCAGAGACTGGCTCATGAGCTACAAAATGCCAAAAAGAAATACCTTTCTCAGAAACGCAAGGAGCAGCAGTCCAGGGAGAAAGAGCAGAGCTTGGCTCAGGTGGGACAGCCGTTAATTCAGCCTCAACGGACAGACGGCCCGCGCTTCACTGGGGGAGGTTTCAGCCTCAAGCAGACGGGGAAAACAACGGCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 244866 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 775668 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 777373 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 795139 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2144305 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 427792 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 476480 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1059946 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1254537 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1534214 20655063 ~ 20669631 (-) True G142404
AMCG00003310 mRNA downstream 31178 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003307 mRNA downstream 193946 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003303 mRNA downstream 1003364 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 1111741 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 1155368 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003308 mRNA upstream 11 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 110962 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003314 mRNA upstream 281736 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003317 mRNA upstream 335682 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003319 mRNA upstream 363942 19484791 ~ 19488202 (-) True AMCG00003319
TU178404 other downstream 2333920 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 3964834 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4407931 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5652027 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 422799 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 432022 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 434594 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 444546 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 446064 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile