RNA id: AMCG00003310


Basic Information

Item Value
RNA id AMCG00003310
length 837
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00003310
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19048676 ~ 19051173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAGGGGGCTGGCTTGTGCCCAGGCTTGCACTTGGCTCTGTGGACCTGGCTTCTGATCTCCGTTCATGTCCTGATGGATGCCCAGGCTGAGATAACTTGCGCCTCATGCCCAGCGCCGGCTACACTGAAACGGCAGGGATTATTTGGGGACAAACAAGTGGACGCAGAGGAGACGGGGACACGGTTTCCTGAGCGGATCGGGAGGGGATCGCAAGAAGCACCCGGGGATCTTGGCTCGGAGACTGGAGTGGCACTTGGTTTGGATGCAGCTGTGCCCGGGGATGTGCTGAAATTGGCGCAGGGTGTGAGGATGCCTCTGTCTGTGAGGGATGCGCTTTATGCCAAAGTGACCGGGGATAGTCCTAATGGGGCCGAGGAGGACCAAGGGACATCCCCTGGTCGAGCAAAGAAAGACGAGGAGGTCAGATTGGCTGATCTGGATCAGAGTCAGGGGAGAAGGACATCAGTCATGGCTAAACTTTCACTGCCCGAAGGCAACAACCAGACCAGGTCTATGAGGGTAAAGCGGAGTGAACCCGAACTGTCTGATGTAACGGAGGGGCTGAAAACGGGTGGCGCGCTGGTGGATGGAGCGCATCCGGAGGATAGGAAAACTGGACCGGCTCTGGACGCACACAGACTGAGTCGCTCCGAGTTCAAATGGACCAGGGAGGACAGCAAAGTATTGGGAAACCCCAGACAAGATGAGCTGAAACTGATCAGCACTACTTTCTCCCTGACTGGGGATTCGGCACATAACCAGGCAATGGTACACTGGTCGGGACACAACAGCAGTagTAAACTGTACCAGCAGTCCAACGAAGGGTGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 211191 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 741993 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 743698 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 761464 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2110630 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 497468 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 546156 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 1129622 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1324213 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1603890 20655063 ~ 20669631 (-) True G142404
AMCG00003307 mRNA downstream 160271 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003303 mRNA downstream 969689 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003304 mRNA downstream 1078066 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003300 mRNA downstream 1121693 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003299 mRNA downstream 1142268 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003309 mRNA upstream 31178 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003308 mRNA upstream 69687 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003313 mRNA upstream 180638 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003314 mRNA upstream 351412 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003317 mRNA upstream 405358 19456531 ~ 19462865 (-) True AMCG00003317
TU178404 other downstream 2300245 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 3931159 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4374256 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5618352 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 492475 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 501698 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 504270 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 514222 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 515740 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile