RNA id: AMCG00003313



Basic Information


Item Value
RNA id AMCG00003313
length 4444
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00003313
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19231811 ~ 19254717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCGGCGTTTGCAGACAGTCTCCTATTCAGCTGCAGACCTAGtgaattttcttttcttgaaggTTGGTGGTTTGTGAGCACGGCGGAAGAACAGGGTTGGGTACCAGCAACGTACTTGGATTCCCAGAATGGAACACGAGATGACTTGGATCTCAGCACTTCCAGGGCAGGAGAAGTCACTAAGAGACGCAAGGCTCACCTGAAGAGACTGGACCGGCGATGGACGCTGGGGGGGATTGTCAACCGACAACAGAGTCGAGAAGAGAAATACATCACAGTACAGCCATACAACAGCCAGGGCAAGGACGAGATTGGGTTCGAGAAAGGGGTCACCGTGGAGGTCATCCAAAAGAACCTGGAAGGTTGGTGGTATATCAGGTACCTGGGTAAGGAAGGCTGGGCCCCTGCGTCATACCTAAAGAAAGCCAAAGACGACTTCTCCCCTCGAAAGAAGACGCTGACAGGTCCTGTGGAGATCATTGGGAACATCATGGAGATTAGCAACCTCCTCAACAAGAAGGCAGTGAGCGAGAAGGACGTGCAGACGGACAACGAGTCCGACGAGCCCCACATCACCAAGAAGGAGATCAGTCTCCCCATCCCCTGTGAGGAGACAGGCAGTGGTGCCGCCCTGCAGGACACCAAGGGAAAAGCAGAGCAGGGCTCCCCAGTGGTGGCCAGGATTGCTCCTCAGAGGGCGGAGATCGGTTCTCCAAACCTGAGACAAAAACCCCCACCCCGCAGGGAGGCGAGTCTGGGATTTCAATTGCCAAAGCCACCAGAGCCCCCTACTGTTGAAGTGGAATACTACACCATAGCCGAGTTCCAGTCGTGTATTTCCGATGGGATCAGTTTCCGTGGAGGACAGAAGGCTGACGTTATAGAAAAGAACTCGGGTGGATGGTGGTACGTCCAGATTGGGGAGAAGGAAGGTTGGGCTCCCTGCTCTTACATTGACAAAAGGAAGAAACCCAATCTGAACAGAAGGACCAGTACCCTGACCAGACCAAAGATCCCTCCCCCAGCTCCGCCAACCAAAAAGCAAGAACCTGAAGAGCCTGCCCCTACAAAGGTCACCCCTACAAAGGTCACCCCTCAGGTCGAGGGACCAGACTCCACTCAAAAGCTCATATACGAGGAGCCTGAGTATGACGTCCCTGCTATCGGCTTTGACTTGGAGCCAGAGCGGAACTCTTTAAAAGGGGAATCCTCTGTAGATGTCAAAAATGATGACATGCCATTTCAGAAGAACTCCCAGCAGTCTTTCAAGCCCTCACCTGTCTCCTCCCTCCAAAGAGCCTCATTCAAGGTTGGGGAATCTTATGAggatgttgctcaggaagaggaGACCATCTATGAGAATGATGGTTTCAGACCTTACTGTGAAGACACGGCATCCAGTAAAGAGTCCAGTGGCGATTCAGACTCTCCCAAAAGCAGCTCCCTGTCAATGGCTCGCAAAGTGTCCACCTCCAGGTCTTCTCTGGGTAGTTCCAGGGTTGTAAGAAAGGTCCAACCAGAACTGGCCAGAAGCCAGTCAATGACCAAAACTGAGGAGACCAAGCCCAGGTCCTCTTCAGATGCCGCTACCAGAGGGTTTACTAAACCGCTAGGCCTCAGGAAAGATATAGAACAGAGAATTGGCCAAAGCCCATCTACCAAACCCAAGCCCCTTGTTAGACCCAAACCTCTGCTGGCTAAATCAGAGTCTCAAAGTCCTGAAAAAATGGACATAAGCACCATAAGACGCCACCTTAGACCAACCGGACAACTGAAACATGGACTTAAGGCATCCAAGGGGGAGGATTCAGAAACTGCCTCGGTAATCTCCTCTGAAGATTCTGTGTCCTCTCGTAGCACCTCAGACCTCTCCAGTATCTATTCCAAGGGCAGCCGGGGAGACTCAGACTTTGAAACCACCATCTACAGGACCACAGACAGCTATGATAAAGTGCAGGACTCCGAGATCAGTTTTGCCGCTGGAGTAGAAGTAGAGGTGGTGGAAAAACAGGAGAGTGGGTGGTGGTACATCAGGCGTGGAGACTCTGAAGGCTGGGCTCCTACGTACTACTTGGAGCCTGTGAAGCAGGCAGAAGTGGCTGGGACAGAGTCAGAGGGCACGCCCATCAGGCAGGGCAGTGGCAGCAAATCCAACAGCCTGGAGAAGAATGAGCAGAGGGTCCAAGCCTTGAACAACATCAATCAGAACATGAAGAAGGCCACACCGCCCATCCCATCAAAGCCTCCAGGTGGTTTCTCTAAACCAACAGGAATGGTGAATGGCTCAGTGAAAATGAGGAATGGGGTGCGCCAGCTTGCAGTGAGACCTCAGTCTGTCTTCGTGTCCGCGCCCCTGAAGGACACTAACCTCCTCTCAGGGTCCCTGCGAAGAAATGAGTCCCTGAACTCCACTGACCAGCTGAGATCTGGCGTGGGGGTACGGCGCAACTCCTCATTCAGTGCCATGAGGTCACAGGTCGGGGATGTCAGGGTGAGGCAGCCGGACATGGTGGGCATGGGCAGCACAGAGGCCTTGGGCCGGGTCTCTCAGAGGAATGGGATCCCAGTCTCCACAGTCAAACCCAAACCCATTGAGAAGTCACAGCTCATCCAAAACAACCTCAAAGAAGTTTACATTTCCATAGCTGATTACCACGGAGATGAAGAGACCATGGGATTCCCAGAGGGGACAAACTTGGAAGTTCTTGAACGAAACCCCAACGGGTGGTGGTACTGCCAGGTGCTTGACAGCGGGCGACCCCAAAAGGGCTGGGTTCCCTCTAATTACTTGGAAAAAAAGAACTAGCATAATCCCAATTTgtataaaacatgtacatttttttatagaCAATGAAAAAACTCTGTAGTATAATGAAAGACACTTTTAGTGCTGgttaactaaaacaaatgtatacattgagaCTGTATAAATTGTCAGTCATATattatgaattttaaaacatgGGCAGGAATGTTTGGGGTGGCCACCCCAATGTCTTAAACAACACCTgatgttgttttgttgattttgataaagaaaaaaaagatgatgatAATTGGATCATTAACAGGgggttcaaattaaaaaattaattgTGCAGGACTTTTCTGTTATATTCCATCCTCCCTGCCTACTAGACTGTACTGGATTGCAGAATGGGTGCCTTTCATCggatatcaaataaaaaaaagttgagagagaaaaaaagagtaTGATTAAGTGCCATAGGCCTATGGGCATGGAACACCGCCGAATTTGGGTTTTTTCAAAGCGTTTCGacaaagaaattaattttaaaaagccgCAGCCCAAGGAGGTAAGAGCAGGTGTTATCAAGAAATACTTGCGTgctacaaacttaaaaaaaaaaaacgaatgaaaagaaaaacgtaCTAATGTCATAAAGGGTAATGGTGACTCAGTGAAAGTCACTGAGATCAGGAAAAAAaacgcattaaaaaaaaatcttgtatgttttgtttcGTATGTTATTTTTTGACTTCCTTAGAGATGTATTTCTGCACTAGTCTTGTGACATGCACAATGCACCCTCAGCCTGGAATTTGAAGTTACCTGGCCCCTAAAGCAGATTGTCTGTTTTGAAAAAATTGTAACTGttcaatttgttgtttttttaacggTACTGCCATTTCTTTATTAcccatttgcattttaatttaataagagccatttttgcttttagaaaatgaaaaaaaagtgttttttattattataatctgaAAAGCTTGAAATAAATTCATCTCAAATTTGTAAGAGTAAAATTCTCATGGAGATTTGGGAAAGTCACTTTAGTCCTTCAGTGCTTTAAGAGGCATCCAGTAACTGCCATACTTGGATCTGAGTGCCTCTACCCTAAACAGTGATTGGTTTACAgtatgtaaaatacttttgttttattttgtaacaagtAGTTCCAgaaaaatattgtgtatatattgctGCTTAACATGTTCTCCTCACACACAGCTGCTGTTGCAGGGGTGAAGGATTGTGGGAAATACTTATCCAAGAACACAAAActgtactggaaaaaaaaaggcttaataACTGCCTAAAAAAAAACCAGGGATTTAGTTGCATAGCATTAAGCCCCAAATGTGATAAAACCAAAGACATGAATaccaatgcaatgcaaatatttatagctttaatatttaattggtGGGTGCACAAATATATTCCTCCAAAAACCCAAACGAGGTTGTAgaactgaaaaacattaaaatagtagtatacattaaaaagacTTATAGTAATGCTATCTGGAAGCACTTGGTTTTCTGGCCCCTAGATAAAAGCATAGTCTCATGCAGGGTTACATTTAAGACAACTGATAATATTGCTGTgcagtattatttttagttgtattttgaGGCaagggaaaatattttaattattttaattattattattattatta

Function


GO: NA

KEGG:

id description
K24032 SH3PXD2; SH3 and PX domain-containing protein 2

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 394326 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 925128 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 926833 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 944599 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2293765 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 293924 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 342612 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 926078 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 1120669 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1400346 20655063 ~ 20669631 (-) True G142404
AMCG00003308 mRNA downstream 102429 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003309 mRNA downstream 110962 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003310 mRNA downstream 180638 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003307 mRNA downstream 343406 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003303 mRNA downstream 1152824 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003314 mRNA upstream 147868 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003317 mRNA upstream 201814 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003319 mRNA upstream 230074 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003320 mRNA upstream 288920 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003318 mRNA upstream 320208 19574925 ~ 19586023 (-) True AMCG00003318
TU178404 other downstream 2483380 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4114294 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4557391 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5801487 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 288931 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 298154 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 300726 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 310678 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 312196 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile


AMCG00003313 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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AMCG00003313 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00003313 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.