RNA id: AMCG00003314


Basic Information

Item Value
RNA id AMCG00003314
length 2700
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00003314
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19402585 ~ 19414822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAGGTGCCTCCCAGGCCCACGCagcttttattgtgttttgagGTGCCTGTTGGCTAGGTGGCACTTTCTTGATTTCCCCGTGTTATAAATATGGCACCAACAATCCGCAATGTATACAGTCATCTGGGACCTCTTTTTGTGTCACGTTGGGACTAGAAACGAAAAGACCCGGGCGTTAAGGAAAGGGACCCATAGAGGAAGCTGGCGTGCAACTGGAAATGTGTGATAAAGTACCGTATCAACTCAGGGAATAGTATTTGTTGGCCATTTCCTGTGCATGCAGTTCTGGCTTGCTGGTTTGTTAATAACAAACCCGGGAAAACGAACTTCGGCGTATTGGAGGGGAATAGAGCTGGGGATTGTGAAGGCTGCCTGATGCAGAATGAGGGAAAGAGCTCTGAGGAGGAGCCCCCTTCTCTGCACTGGGGTCTGGATCCCATTTTCTCTGCCTTCGCCAGGCTGTACATCAAAGACATCCTGCAGATGAAGGAGTCGCGGCAGGTCCCAGgtattttcttttacaaagcACACCCCATTTACAAAGTGGATGTTTTAGGAACTGTAGTATATAAAAGAGAGCGAGAAGACTTCTTCTGCTATGGAGTGGATGATGGCACGGGGGTCATTAACTGCCTCTGCTGGAAGGATGAACAATGGAAAGAAGGCACTGAAACTGTCAAATGTACCACTCTGGGAGGCTTTCACCTGGCTGAGCAGCTCCAGAAATTGCAGCAGGCCCAACAGACCAGTTCCTGCCTGGAGATTGGAGATTTATTCAGAGCTAGGGGTCCCATCAAGACCTCCAGGCACCGGGATCGTGAAATCATAGCATCCACCTACTATAAAGTGGAAGACCCGGTGCTGGCAATCCAGATTTCCTGGATGATGGAAGTTCCTCAGCTGTATCGGAGATTCTATGACAAGCCATTTCAAGTGCCAATCACTGGCAGTGAAGTTGAGGGCTTCCAATCATTGCCAGGCCTGCTGGGGCAAGTGTGCCATACCCTTAAGGACTTCCTGAGGGAGACGGGCATGGGGAGCTTCCACGCCCATGACCTGGAGACTGTGGACAGTCTGGTGTCTCTGGCCAGCCGCCCCCTTCACAGCCCCTCTGCCCAGCAGGAGTCCGCGGAGATGCTGTCAACCTCGAAACAGGTACATAATTTGATCAGGCAGGCCGTTCAGATTCTCCAGCAAGAAGGGCTGGTGTTCCGTAAAGTCAACTCTCAAGAAGAAGTCTACCAGGTAACTGAGCAAGACCAGGAGCTACACAAGGTGACCAAAGAGATTATCAAGGAGGATTCCCAGAGAGAGAAGTATGCTGAAAAGGGCTGCCATTTCCTGCATATTCTGTCTTGTGTAAGAGAGAGCTACAGCCGCAATATAAGTGAACCTGCCATGCATCTGGTCCTGAGCACACTGGAGTGTAACAGTGATATCATCAGCACCGCAGACAACCACTACACAGCCCTCTGAGAGACGGCAATCTCTCTGAACCTTCGGAACTGAACATGTGGGTCTATTGGACTGAGCAGGAGCTGGTCCTCATAAGATGTACAGTGTTATTGGATCATTAACAAGTTGCTTCTCTCTTTCAATCCAAAATCATTATGGTAGATTTGACGAGATTCTAAAAGTGCTGCCCACTGTGTATTCAACTTTGAGGACTATATATGCAGTGGTGGTGTTAAACAATGTGTCATCACAGCTATTGTTAACAATGGTATCTGTAGAACATGGGTGGGTAACCTACAGCCTGCTCATCCACAATTTGACTTCTACTGAAGAGAAATTCTGACATTTGAAGTGTACTGTGACTTAAATTATActacaatgaaaacatttttacttttaaactaAGTAAGAAGCTTTGCTGGCTTGACCTGACACTGTACATTGAATCAagtagaaacatcttggggaggccttcatccagcaggctgatgatgatgatgatgataaatatTAGATAAAGTTTGTAGTCTGTGATTGTGTTTGAGATGATCTTGTGGCCCTCAAGGCTTAATCTTTATCACAGGTTGCCCACTGTTGCTTTTTGGACTGAAGAGTTGCGTCACCATGTACTGCAGGGATCCACAGTTATTTTTCACCGTTTGCCAGTTTCTCAGGATTACATGAACTAATGGGCCAGACACGTATATCCTCTCATCCCCCACTCCCCTGAAGTGATGCCTGAGAGGGctattgttatgtatttgtcAGATTACATCAAATTATTTAGCAGAGTGtaagtatgtaaaaaaataaatgtttccctATTCATATGAATATcatttcagtaaattaaatCTATTGTTCTTAAACAATCCCTTTAAGATGGATATTTATTCTTGCTGTTCTGTAACATGTTTCAATTGTAGGAtaaatattgatacatttttaaatatgcccAATTTCAACTATGGGGATGCAATACCAAGTTAATAATGCTATGTTTTTCTGATATAAACTATTTGACAGCAGTTCCAAATAATGGtgtttctaaataaaacacGTCACATCACATCCCATAACATGCTCTTGATAAagtttttttataaaatgtggaTGTGACAACAATCTCCTAATATGATGATGAGATGTGATTGCAAATCATATGTCTGATGctgtaaaagcaaaatatgtattaaaagcaCTAAGTAGCACATTTCCTTGCcatactttatatattaaaat

Function

GO: NA

KEGG:

id description
K23312 STN1; CST complex subunit STN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 565100 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1095902 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1097607 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1115373 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2464539 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 133819 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 182507 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 765973 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 960564 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1240241 20655063 ~ 20669631 (-) True G142404
AMCG00003313 mRNA downstream 147868 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003308 mRNA downstream 273203 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003309 mRNA downstream 281736 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003310 mRNA downstream 351412 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003307 mRNA downstream 514180 18842306 ~ 18888405 (-) True AMCG00003307
AMCG00003317 mRNA upstream 41709 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003319 mRNA upstream 69969 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003320 mRNA upstream 128815 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003318 mRNA upstream 160103 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003325 mRNA upstream 219066 19633888 ~ 19654154 (-) True AMCG00003325
TU178404 other downstream 2654154 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4285068 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4728165 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 5972261 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 128826 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 138049 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 140621 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 150573 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 152091 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile