RNA id: AMCG00003317


Basic Information

Item Value
RNA id AMCG00003317
length 2316
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00003317
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19456531 ~ 19462865 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGTATTGGCATCTCCAGTGGTGCTCCCGGCCCCCCTGGCCCTGCAGGGTCTGTCTCTGTCAGTGACATTGTGTCCCTGCTGCAGAGGGAGGATTTGCGGCAGTATCTGATGGGACCCCCTGGCCCTCCTGGTCCCTCTAGCTCTTACAGCCTGCAGGAGATCTCCTCTCGAGTCCTCAGCATGTTGACCGATGCAGGGAGAATAGGTGTGACAGGACCCCCTGGTCCTCCAGGACCCCCAGGACTGCCAGGCTCCACCTACGgagacatatcagctctgctgCAAAACTCAGAGTTTCGTAGGTTTGTTGGGCCCCAAGGGCCCCCCGGACCCCAAGGAAGGCAGGGCCCCCAAGGGCCACCCGGCCCCACAGGATCAGTCAGCTATAGTGGCTCAAGCAGAGAGCTGGAAGACATCAGAACCCGCCTGCAGAATGTTGAGTTTGGTACCCGCTCTGGTCGCTCTGGTCCCCCTGGTCCCCCTGGTCCCCCTGGCCCTCAGGGGCCCCCTGGGGTGTCCAGTGGTTTGGTGTCGTATGCTGAGAACACGCAGAGAGAGCACTTCCGTTCAGAGCTCATCAGCTACCTCTCCAGTGACAGCAGTATCAGGAGTCGCATATCTGGCCCCCCAGGCCCCCCAGGCCCACGTGGACACAAAGGGGATAGAGGAGACCCTGGTTACAGTGGGGGTGGCTCATGGACTGACACAATGGATTACTCCACCATTGCAGTGAAAGTAACTGACTACATGAAATCCCAGGGCCTGCTGAAAGATGCATCCCACAGTGTGACTAAGCATGTGACTGAGCGTGTGAGCTACCCAGGCCTTCCTGGCCCCCCTGGCCCCCCCGGTTTCCCCGGGCCTGTCGGGCCCCCAGGGTACAGCCACGTCATTGGGGCCTATGGCAACGTCACCGCTGACCTGATGGAATTCTTCAGAGCCTATGGCACTATTCCAGGGCCCCCTGGTAGAGAAGGAaagaagggggagagaggataCATTGGCCCTAAGGGAGACAAAGGTGAAAGAGGACTGCCAGGACCAATGGGCATTGAGGGCCCCAGAGGATACAAGGGAGAGAAAGGAGAGCAAGTTGCGCTTGGCCGGAGGAAGAGAAGCATAGGAGTTTAAAACAAGAACAGGATTCACTCTCcttaatttatgtaataatacCGAGCAGTACTGGAAACTTTGGACTCTCTGAGGGATGTGGAGTGTCCGCGTCACTGGCGATAACAGTAATATGTTGACATGTTAGTGGTATGTTGcttgctttttctgttttggtttttaactGCAGTGTGGGGGGAGACTTTACTGAATAGCACTAGAGTGTTCAGTTTTTATATAAAgatttttaatacttaattcTTGGTACTATATGTCTTTGTAGCAGTTAAACCTGGGAGAAAATCAAATATGGAACACCTACAAATCATAATTCCCTCTTGCATAGTGCATGCATCTAtgtaacatgtaattaaaatatgataaatcCATTAATTGTAGATGATACGCAAGGTTTATGGACACATTGGTAACAtcataatgtaatgttttcagaAGTATAATGCAATCCTAGATGGATGCACTGGGTATGAGGCAATAACCGTAAAACATAACTTGTGGTAACCTAAGAGGGGTATAGAACTCATGTAATTGTCAGAGTTTAGCTGCCTTTTAAAGTACTTTTAGCAAAACCTGGTGGGTTGGTCACTTCTTTAATTTTCAAACCTTCCCTCCCCTGAATGACCTCAACACACCATTCATTCCTGCATGTTGTTTGAGTGACTAAAAGAATGGGACCCATGTATTCTCTACATATGGTATACCTTACATTTCACTACTGCTACTTTTGTGTGGGTGAGATATAGTTTGTACatgttctgcatttgttttattttgatgtaatcattttttttatagagcCAGCTTGTTTTCCACAGTCTAACACTTTTATAAAACAATCTGCAATTATTACATAAACTattttttccacacaaaaaatattctaCTGCTATAAATTGATTTACAAATTAGTTCCATAAAACCCATTTATGcaaaaagtttttaaattatggaaatgtatttttaatacaaaaactttgaataaatgtttgtttactatattgtatttttggtGTAACTATTCGGATAAAGATGCCTTAATTGCTCTGACTTTTATAGGATTCTCCATACAGGTTAATGTAAGGAAAAAGCCTAAAATGCAGAGACCTTCTGTATAGATCTGtggattacatttaattttgtaataactgtaggaataaataaaaaatgcaatattaaaatata

Function

GO:

id name namespace
GO:0048925 lateral line system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 619046 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1149848 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1151553 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1169319 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2518485 16937634 ~ 16938046 (-) True G141879
TU178861 lncRNA upstream 85776 19548641 ~ 19548932 (-) True G142176
TU178890 lncRNA upstream 134464 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 717930 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 912521 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1192198 20655063 ~ 20669631 (-) True G142404
AMCG00003314 mRNA downstream 41709 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003313 mRNA downstream 201814 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003308 mRNA downstream 327149 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003309 mRNA downstream 335682 19082351 ~ 19120849 (-) True AMCG00003309
AMCG00003310 mRNA downstream 405358 19048676 ~ 19051173 (-) True AMCG00003310
AMCG00003319 mRNA upstream 21926 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003320 mRNA upstream 80772 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003318 mRNA upstream 112060 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003325 mRNA upstream 171023 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003326 mRNA upstream 193800 19656665 ~ 19661649 (-) True AMCG00003326
TU178404 other downstream 2708100 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4339014 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4782111 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 6026207 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 80783 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 90006 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 92578 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 102530 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 104048 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile