RNA id: AMCG00003318


Basic Information

Item Value
RNA id AMCG00003318
length 5504
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00003318
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19574925 ~ 19586023 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGACCAACCCTCAGAGAGacgaagaagaggaagagacacaAATCGTTTCATCCATCCCTCGCCGTGATGCATTTCAGTCGAGACTAAAGAGGATGCAGGGTGGGATATTTAAGGTATgtgtggtggtggcagcagcCATCCTCAACCACCCTTTGTTCCTCCAAAGGGAGAATACTACCATCCCTGAGCGGGATGCTGAGGTCATCTCCCGCATGAAGGACCATGAGGAGAGGTTGCTGGCTGAAAAGGTACGGCTGGAGCAGGAGGTGTCTCGGGCAGATCAGGAGCCACCTAAGGCAGATCCGGAGGACAGCCCTAGCTGGGACTTCTGGAGCGCTCTTTCTATGATCATCTTCCTCACGATTGAGATCTGGAGACAGGATTACCAAGACACTGCCATGCAGGACGCCAATCATGAGGAAGAGGACTACTTTCCTGCTGGGAACATCTCCGCAAGGACCCCTCTCCCAGACAAAGCCGTCCTTGGCAGCTTTCACGAGAGGTGTATCCGTATCTCAGGCAATGAGAGCTGGAGGTTGCGGGAATTCGTGGAGGGTTTTGCTGATGACCTCCTGGAAGCCCTGAGGAGCGTCTGCAACAGGGATGCCGACATGGAGGTTGAAGACTGTATCGGTGTGGGGAGCATGTACGAAAATTGGAGGGTGAGCAAGCCTCTCGTGTGCGATCTGATAGTCCCCTTTGCCCCACCAGAGCCGTACCGCTTCAAGTTTCAGCTCTGGTGCAACTCGGGGAACAACATACCACCAGACAGACAGGGGTGTGGCAGAATCAAGGTGGTAAAAGCCAATGAAGATGGGCCTGGCTGCCTCTGTGGTAAGACCAACCTGGGTGAGGACATGCTGTGTCTGCTGCATAGCAAAAACGAGAAGCTTAAAGTCAGTGATGCCATGGATGATGTTCTGTGCTCCAAGAACACACCTTACTTGGCCAAAGACCAGGTAATGAAGTGGTTCCAGATCTCCATCACCAAAGCATGGAACCGCATCTCTCACAAGTACGATTTTGAGCTCATGTTCCGTAACCTGGATTCACCTGGAGCTCTGAAGATAAGATTCCGATCAGGGAAGCTCATCACCTTCAACATCACTCCCGTTGTCCAACTTGAAGACACAGATGCGTATTTTGTCTCACACTTTACCCTTAATGACGACAATGCTTCAGATATTTATTGGCCTCTTACCTTTGCCGTCTATGAGAAAAACCTGCTGAAATCTTTATCCAAGAGACTGCCAGACAATCCTTGCCATATTAGCTGCCTTCAGATTGTCTCGTTCTTGAACAGGAAGCAGACAAGTCTCACAGGCAAAAGTGCCCTAACCAACTACCACCTGAAGACTATACTGCTGCACTTGCTCTTAAGCAAACCTTCTTCAGAGTGGCGCTCTGAACATCTGGAGAAGAGACTACGGGATGTCCTGCGGTTTCTGGAGAAAAGTCTTCAGGAGAAGAAGTTGTATCATGTCTTAATTGGAAACAAACAAGTTCCAAAGGACGTTACCATTCCATCGGTTTTCCGAGCTGTGGAGCCTCTGAATCTGTTCCGCCCCCTTGTATTACATAGGTCTCTTTATGCCAAAACAATGGAGCACTTCCAGGAAATGCTCAAAAATGCACCTGTCCTGATTCAGGAGTACACCCCACACTTTCCAAATGGGAGCGTACATACAAGCCTCAATGCAAGTCTATAGTCCTCAGTAGTTTACAGACACGAACACATGGAAATACTGTGACATCTGTGGAAGGAGGATATCTTATAAACCTGGTTTCATGTGGTAATTCCAGTTGTGTTAATCTTATGTTGTGACTGTGGCCTGCTCCTCTGGCAGTGGGTTTctacataagaaaatataatttaaacagacTTCTCCTTATGTTTGATTTTCAAgcatttcctgcaaaaacaaccTTATCGGGAGATGAGTCATAACAGTTAACACATCTGTGTACTGATCTTCGGTGAATGAGGTTACCATTATAGGAGTTAGAACAGACCAGATAATCATTCTAGCCTGGTCTTTGTGCAACTAGAACAACTTGTCACAGAATTACAGGAAGAGCAAACCCACCAAGTTTGAAagtagtataaatataaatggtttTCAGACCAGAATGTATGCAATTATTGCAGATTACATGAAACATGGTTCCATGATAGTACTGTTACTGAGGCACATTCTATTATTGCACTGTAGATTTCCACAACAGAGGACTAGGTCTGTTAATGTGTAAGAACAATATCGATTTGTGTTGCTAAACTTggaaaatattaacataatgAGTTCTGTCATTAGAAGCATTCTATAGTTAAACCTTGTTTCTATCAGCTTTTAACTGGCTGAAGGAAACAAGTGACCAGGAAACATTGCAGATTATATTGACAACAACTTTTGCATTCATAGCCATATCCACATCTCCAGTTAAGTCTGAACTGAGCTGGAATTGAAGTTTCATCTGGTTGTTCTGAAATGAAATTGTTACCATTTCAGGAATGGTTCAAAATAAGTCATGCATCTTTAATTAGATTTAATGTCATGCTTGACTGCAACATAAATCTAGTTTAAAATCATTGCAAATCAgagacaaaaactaaatatcaaCAAGGATGTGAGAATGAGGCCTGACTAAATATACCTTAAACTTCTCCAAATTGCTTGCAGATTTATATATATCCATCTATCcttgaaaccacttatcctggtgagggttgtggggaggccagagccaatcccggcaggcatagggcgcaaggcaggaaatacacccaggacaggatgccagtccatcactgggcaacacacacacagcaatttagagagaccaatcaacctaacccgcatgtctttatacagtgggaggaaactggaatGCCCAGAGAAACCTACGCGGACATGCAGAGAACATGCAAAcgccacacagacaggccccccaaGCTGGGACTCAAAGCATTTGTATGACAGTTTATATTGGTGTGAATAGGTTTGATCTGACATCACACCCCATTGGAATGTAGTTCACTTAGATCCATTTTTGTTTGCACTGGCAGACATAACGGCTGTCTCCAGCATGGCAGTGAACTATTTGTGTGAACTTGCAGATGCTTCTAaccaaaccattttttttaaactgcatttttaaaaacatttttaagagcttagtttaaatagctattttgtacattttatatttgtataggctggttgtacaaatatttaagtattgtaaattaaactaaattgatGTCATGTTGCATCTATATAGCATACTTTGAATAAAATCCCTTttctctgatttttttttttctatgttgCTTAATATTCTATTGCCTTTTATACTTAGACgttcatacatacattttcactttctttaacaaataataatgacatgTTTAAAATAGATAATTCATATCTATTAAAAATAGATAATATGACCTGGTTGTGTCTCTTTACCTGCATATTGTGAAAGtgtacagtatttttctttaaatgtttgcacAATGACTaaatgtacagtgtgtgcagtatttattttaacatgtttaatggACAATTCTCTAAaacagtggtctccaaccctggtcctggtcctggagagcccctatcctgCAGGTTTTAGAGGTTACCCTTGTAtaaccaatttataaacacctgaaagtatttaattggAAACAAGCAGGTGCTGTGATCAATAGTTTGTAAAAGGATTGATTTTGAGCCGTaatctgaatacctgcagcaTCCTGAGGGAAGAATTACCTTGTTGACttgattgattaataactcccaTGTTTTCCAGGTTTGTAGATATTGGTGacttagggtgacctataagattaagtgaattggggctctccaggaccagggttggagaccactgctctAAAATATTGGGGAAGATTAAATGAGGGTATCATTAAAGTGTTCTCAATTTACTGAATGCATCTTAGATCTTACAGTATAATGTTGCCGATCAATCGACCCCGTAGAACGCTATAATTGCTGAAATGCTCTGACAATTGTAGAATTGCCTTTGCACTGTTCTCAACAATGTTATGTTggaattttatatatattttatactacaaaatagtttttcttttgtgtttctcaCCATGTGTTGCTTTGAAACACCTCAGTGTCTTATGAAACTGCTATATTAAACATTGCGAGGACCTGAAGTTAACATTTCTCTTTTCAGAAATATTTATCACTTGAGAGCacttaatggaaaacaaatgttttggcAGTAGTCCCTTAAGTATGAGGATAACATCTGTGAATGGCTAGAATTGTTCAATCTTGTAACCTACAGGACAGAGTAGAGATGTTTTGGGGAATGGGATGGGCATTATTGTAGGAATATAGTAAGGGGCATATACTTACAACATAAAACGTAGAACCTCCTTTCAACGAGATATCCAAGGAGCAAATTATATAGTACTGGCTGAGTTTCTAGTGGATATGTGAATgctagattaaaaaacaaacaaacaactggaGTCACTATTGTTAAAGCAAACTACTTctcattcacaaaacacaatctaGCAATTTCCACtttcacttgtttgttttatgtatttatttttaaacattttgtttgggtttttcaTCCTGACCTTTAATGTCACAATTTGTACATATACTCATCACAAGCACTGTAGCAACAGCAATTCAAACAATTTCTTAACTGGAAAACAGTTGCCTTTTAGAAACtatgtttaaattgaaaaccTATTTCTAGCACAATGTCTGTCTATCCTTCTGCATGAGAGCTCAGAAAAATGATTTCCCTTTGAGAAAGAGCTTACTAACAGGGGGATTagatattttcattaaaatgctaattttcAGGTACAGTACTACATTGaagtacatatattttttataatctcAATGAGGATGATTTATATAACATGctaacatatttttgtaattgaaatagGTTTTATCCTTGACAAtgtgctattttatttcagtaacgTGTACTACCGACAAATAACAAAGTGctataaatgtaaatttatattcatttgtatttggtaATCCAAGgtagcattttattaaatttgttCATGTTTTAGCGTTTGGTCCTAtgctagaaaaaataaataaaacaaaaaggtgatttttctttttcaacatttctttttgtgttttcttttcacacttTACCTAGGTGAAAAAGTGGTATAGAACTAGATTTCCTGTGCAGAAAACCAACCAGGCTCACACAGCAGGTAATTTCTAAAGATGTAGCATAATTTCTGTTTTAGTGTGGAGGAAACGCCCTGTATGGTTGTAAAAGTGTTCCCTCTAACACAGTCAAGTGTTGCTTGAAACAAAGAGGAACCTGCCACAAACTTAATTGTACAGTGCAATTTCCTGCCTTTAGTTTCGATCAGAGTTCTTCACATCAGTTTTGCAGTACAAACCAATCAAGGAGAAAGTGACTTCAGACAAGTATGAACAGCTTCTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178861 lncRNA downstream 25993 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 737440 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1268242 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1269947 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1287713 18287003 ~ 18287212 (-) True G142060
TU178890 lncRNA upstream 11306 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 594772 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 789363 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1069040 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 1073589 20659612 ~ 20743604 (-) True G142406
AMCG00003320 mRNA downstream 5393 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003319 mRNA downstream 86723 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003317 mRNA downstream 112060 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003314 mRNA downstream 160103 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003313 mRNA downstream 320208 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003325 mRNA upstream 47865 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003326 mRNA upstream 70642 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003330 mRNA upstream 113963 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003336 mRNA upstream 161403 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003337 mRNA upstream 216056 19802079 ~ 19820633 (-) True AMCG00003337
TU178878 other downstream 5310 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 8338 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 11647 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 20813 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 30241 19543648 ~ 19544684 (-) False AMCG00003320
TU179004 other upstream 228119 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile