RNA id: AMCG00003320


Basic Information

Item Value
RNA id AMCG00003320
length 2511
RNA type mRNA
GC content 0.54
exon number 19
gene id AMCG00003320
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19543637 ~ 19569615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGAGGCTTCCGGGTCCTTGGAAGTCAGGTGGGTGCAGGGTATCACCAGCCAGCATGTGGGATTTGTGGACAAAAAGACCCCGTGCTACCCCTGTGGGAATTACATAATTTTCCTTGACCTGGAGTCCAAGTCCAGGAGAGTGCTGCCGTGCCCAGGCCGGGGGCTGGGGGCCTTCGTGGGAAATGGGAACAGCAGCATGGTGGCCTTCTCTGAGCACAGGCtcaatccatccatctttgTATACACCTACCCTGCGCTTGTCATGAGGAACGAGCTGAAAGGGGTAGCCCAGTTGGACTATACTGCCCTTGCGTTCAGCTACTCAGGCCCATATTTAGCCAGCTGCTCCTCCATTCCAGAGCACACCTTGACAGTGTGTGGCAAACTCTCTTACTTTGGCCCTCAGATGCCAGTTTCAGCTCTGGCAGGACTCATTGGGGAGAGGGCAAAGACCTTTGTGCCAAGAGAAAAAATGCTGGCACAGGTCCACCCCACCTCGTTCTGCTGGACACCCACCTCTGACCTCTATGTGGGTTGTGCTGAAGGTCACTTGTTGCTTGTGAACCCTGAGACTCAGAACGTCACTGTGCTCTTTAACCCCCACCAGAAGAGAGACATCCCAGATGAAGCAGAGCTTCAAGAAGGCAGCCTTAACAGCTTGGCTCTGCACAAGGATGCACACAGGATGTTTGCTGCAGGAAATGATGGAGCATTACGTTGCTTACATATCAAGGGCAAACAAGTGGAGGTAACGCAGTGCTGGAAAGCTGAGGAGCCACTCACACACATTGGATTCTCCCCTGACTACGAGGCTCTTATTCTGTCTACCTGTAATGCGACCAGCCTGGCATGCTGCCCAACtgcagagtgtgtgtctgtggggacCGCCTCTGGACACATCTACTTCATAGACCTGACCCAGAAGGAGCTGCCGCGCCCGGTTCACAGGGTTCACCTCTACAGAGTGCCTGTGGAGCATCTCCAgtatgACCAAGGAGGAAGTTTCCTCATCAGCGGAGCTTCAGACTCACATGTGTTTGTTCTGGACGCCAGACCATCCAAAATGTTTGAGGTTATTGGATACACAGAGGCTGCAGGTTCTGTTGTGGATCTATCTTCTCTTTACAACAAGGATAGCAAACAGGTGAACGTGCTGGTGCTGTCTGCAGGGAACAAAGAAAACTGTGTGAAAGAAGGGAGCTGCCTGGAGATATTCATGCTGCAGGCCCAGCTATTGAAAGGTGGCTGTGCTGATCGACGGGGCTGTATTCGAGATGAAATCCTGCAGAAACGGCACTATGCTGCTGCTCTGCCCTTCTCTTCTGCAGTCCTGGGGCCGAACAACAGAGCCTTCGGCTACTGCATCCGGACTAGGACTATCCAGAAATTCCTCCTGGATGAGGGGATTTCAGACACTAAAGATGTTGTCCAGGTGACCCCAGAACGGGAAACTGAAGGTCACGCTCTTGGTCCAGCTTCTCTTCTCCTCTCGCCCCACCAGCTGTGGCTGGCATCTCTGGGGAAGGACGGTTCGCTGCGTGTCTTTGAGACGTCCTGCATGgaGAAAGTCCTCCAGCTGCAGAGCCATTCCAGCCGGTTGAGTGGGCCTGTGGCGCTGGCCTTCTCCCTGGACAGCCAGACCCTCCTCACCACCGGCCTCCGGGACGGGGCTTTGGTCCGTAATGAGATGGAGATGCAGATCCTGGCCTATTGTTACGAGCGTGATGTCATCAAAAGAGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCTAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagtTGGAGAGAGTGAAAACACTGCGGAGGATCGAACAGGCAGATCTCAGTATCCGGAAGCAGATTTTGGGGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGCGCTCAATATGGTGGCCTCAGCCCTCACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGGTCCGTAATGAGATGGAGCTACAGATCGAGGCGTATTGCTACGAGTATGACGTCATCAAAAGGGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCAAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagctggagagagTGAAAACACTGCGGAGGATTGAACAGGCAGATCTCAGTATTGTGGAGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGTGCTCAATGTGGTGTCCTCAGCCCTGACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGGTACAGCATTGA

Function

GO: NA

KEGG:

id description
K24223 CFAP43, WDR96; cilia- and flagella-associated protein 43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178747 lncRNA downstream 706152 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1236954 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1238659 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1256425 18287003 ~ 18287212 (-) True G142060
TU178467 lncRNA downstream 2605591 16937634 ~ 16938046 (-) True G141879
TU178890 lncRNA upstream 27797 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 611263 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 805854 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1085531 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 1090080 20659612 ~ 20743604 (-) True G142406
AMCG00003319 mRNA downstream 55435 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003317 mRNA downstream 80772 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003314 mRNA downstream 128815 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003313 mRNA downstream 288920 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003308 mRNA downstream 414255 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003318 mRNA upstream 5393 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003325 mRNA upstream 64356 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003326 mRNA upstream 87133 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003330 mRNA upstream 130454 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003336 mRNA upstream 177894 19747426 ~ 19762294 (-) True AMCG00003336
TU178404 other downstream 2795206 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 4426120 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 4869217 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 6113313 13427294 ~ 13430324 (-) False AMCG00003164
TU179004 other upstream 244610 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile