RNA id: TU178878



Basic Information


Item Value
RNA id TU178878
length 464
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00003320
representative False

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19543637 ~ 19569615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cacaaatgtaaaaagcCAAACAGtgataatattttaatgcagcttccagttttgttaatttaaccgagtttagatttttgtttatgGAGGCTTCCGGGTCCTTGGAAGTCAGGTGGGTGCAGGGTATCACCAGCCAGCATGTGGGATTTGTGGACAAAAAGACCCCGTGCTACCCCTGTGGGAATTACATAATTTTCCTTGACCTGGAGTCCAAGTCCAGGAGAGTGCTGCCGTGCCCAGGCCGGGGGCTGGGGGCCTTCGTGGGAAATGGGAACAGCAGCATGGTGGCCTTCTCTGAGCACAGGCtcaatccatccatctttgTATACACCTACCCTGCGCTTGTCATGAGGAACGAGCTGAAAGGGGTAGCCCAGTTGGACTATACTGCCCTTGCGTTCAGCTACTCAGGCCCATATTTAGCCAGCTGCTCCTCCATTCCAGAGCACACCTTGACAGTGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178861 lncRNA downstream 17981 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 729428 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1260230 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1261935 18304631 ~ 18304978 (-) True G142064
TU178713 lncRNA downstream 1279701 18287003 ~ 18287212 (-) True G142060
TU178890 lncRNA upstream 27714 19597329 ~ 19599114 (-) True G142200
TU179066 lncRNA upstream 611180 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 805771 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1085448 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 1089997 20659612 ~ 20743604 (-) True G142406
AMCG00003319 mRNA downstream 78711 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003317 mRNA downstream 104048 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003314 mRNA downstream 152091 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003313 mRNA downstream 312196 19231811 ~ 19254717 (-) True AMCG00003313
AMCG00003308 mRNA downstream 437531 19120860 ~ 19129382 (-) True AMCG00003308
AMCG00003318 mRNA upstream 5310 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003325 mRNA upstream 64273 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003326 mRNA upstream 87050 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003330 mRNA upstream 130371 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003336 mRNA upstream 177811 19747426 ~ 19762294 (-) True AMCG00003336
TU178867 other downstream 326 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 3635 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 12801 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 22229 19543648 ~ 19544684 (-) False AMCG00003320
TU178404 other downstream 2818482 16748061 ~ 16748431 (-) True G141826
TU179004 other upstream 244527 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile