RNA id: TU178898


Basic Information

Item Value
RNA id TU178898
length 1152
RNA type TUCP
GC content 0.48
exon number 5
gene id AMCG00003323
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19618881 ~ 19633150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACAGCAAATCACATGAGCAGGGATCTGTTTACAAACTGAACAGGAGCAGTCATATCGGTTATACAGTTATAAGGAACCTGGGCTGAGGAATGGGAATCTGGCTGGGCGTTCACTGCTGGAGGCTAAGACGACAGGGAAGGAGAGAACAGTATGGATACAATGAGGTGGTTCTGAAGGGTGCAGGAAAAAAACTAAGCCTTCTTGGAcagatgtgtgcagtgtgcttgGAGGAGTTCAGAGCCAGGGACGAGCTCGGGGTGTGTCCTTGTTCTCATGCGTTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAGATCCGTAGTGTCTGCCCAATGTGCAACAAGCCCATCTGCAGGCTGACAGACGTGCGCCAGGGAGCAGAGGTGGCACAGAACCCGCAGGAGGTGTGAGGGGTGAAGGCAGTTTCCGGGCGGCCATCTTTAGGCCCTGAAAAAGCTGCCCCTACTGGAGGACTAACATCAGACTTTAGGGCATAaacactccccccacccccctattGCCACTCCAACAAAGGCCTGACCCAGGTCTCCCAAATACCACTATCAGCTTTACGGTGTCAACTGAAGAAGTTCTATTAGTCTCTTCCGccttactgaaaaaaaaactcctagATATTACAAATGGTTACATGTGGGAGCCAGTATGGCATCCCAGGAACCTTCCCAGCCTGGATGTTCCTCCTCGGCCCTGCAGCTGCAGGCCAGGAGAAGAAACCTGGACAGGGAGAGGCACTTTAATTCCAGGATGGTTTAGCCAAGAGCCACAAAAAGGGAGCATCAGGATAAGACTGGCTTTTAGGAGCCTGTGTCGATGGGTAACGCAGACAGacttcaaattaattgtttctAGTTATTTTCTATCGTTGTATGCTCTGAAATAAAGTAACTATAGGGCAGTACTGTGGAGTAGTGGCTAGGGCTCCAcactctggagcagagggtcgatcccaggtgggggcattgctgttgtacccttgagcaaggtactttaccttgattgctccagtaaatgcccagctgtataaatgggtaaaatgtaaaaaataatgtgatatattgtaacaattgtaagtcaccctggataagggtgtctgctaagaaattgagtaataataataactatgtttTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178895 lncRNA upstream 2314 19616261 ~ 19616567 (+) True G142205
TU178883 lncRNA upstream 24614 19593878 ~ 19594267 (+) True G142194
TU178859 lncRNA upstream 77634 19541042 ~ 19541247 (+) True G142174
TU178854 lncRNA upstream 87014 19531412 ~ 19531867 (+) True G142170
TU178826 lncRNA upstream 105749 19512483 ~ 19513132 (+) True G142146
TU178921 lncRNA downstream 21293 19654366 ~ 19656155 (+) False AMCG00003324
TU179058 lncRNA downstream 495294 20128367 ~ 20128715 (+) True G142340
TU179072 lncRNA downstream 641260 20274333 ~ 20274616 (+) True G142354
TU179095 lncRNA downstream 962397 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 1011408 20644481 ~ 20644794 (+) True G142397
AMCG00003322 mRNA upstream 4858 19610754 ~ 19614023 (+) True AMCG00003322
AMCG00003321 mRNA upstream 13460 19588634 ~ 19605421 (+) True AMCG00003321
AMCG00003316 mRNA upstream 44907 19569804 ~ 19573974 (+) True AMCG00003316
AMCG00003315 mRNA upstream 163915 19415692 ~ 19454966 (+) True AMCG00003315
AMCG00003311 mRNA upstream 393925 19210583 ~ 19224956 (+) True AMCG00003311
AMCG00003324 mRNA downstream 18103 19651176 ~ 19658477 (+) True AMCG00003324
AMCG00003328 mRNA downstream 29011 19662084 ~ 19677407 (+) True AMCG00003328
AMCG00003329 mRNA downstream 77123 19710196 ~ 19728221 (+) True AMCG00003329
AMCG00003327 mRNA downstream 95203 19728276 ~ 19741080 (+) True AMCG00003327
AMCG00003332 mRNA downstream 185945 19819018 ~ 19823045 (+) True AMCG00003332
TU178857 other upstream 81790 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 926677 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 1940359 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3059675 16554011 ~ 16559206 (+) False AMCG00003256
TU177906 other upstream 5013444 14601317 ~ 14605437 (+) False AMCG00003207

Expression Profile