RNA id: AMCG00003325


Basic Information

Item Value
RNA id AMCG00003325
length 6317
RNA type mRNA
GC content 0.51
exon number 35
gene id AMCG00003325
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19633888 ~ 19654154 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGAAGTACTCTTGTTTTTTCATACTATGTACTTCCGGAGGTTAAAAACATGGCGTACCACATGTGAATTTGTACGGGAGGCACACTGTAATAGAAAAACAGCAGACCTGAAGGAAAGAAAACATGGCATCAGCAGAGGATGATTTTCCCCGTGGTgggtcatttaaaaaatccaaagGGGTCAAACCTGTAAGGGAATTTGTGGAGAAAGATAATTTGTTCGAGacGCAAGAGccagaaaaaggaaagaaaagaaagaaagtaaaacgAGAGGTGGAGAAGAAGCCCAAAAAACTAAAGTCCAACGAAGAGGAAACTCTCAAGCTCAATGCATCAACAACTGTCGAAATTCTTCATTTAAAGGAGGCGCGTGATTTTGAGCTTGTTGTCAGTTTGCCAAGTGGCCTCACAGGCTACATCCAGATCACCAGAATCTCAGACGCCTACACCAAGATCCTCAATGAGCAGGTGGACGCAGGAGAGAGTCTGGAGGACACTTTGGCCCTTCCCCTCCTGTTTCCCCCTGGGATGGTGTTGCGCTGTGTGGTGTTCAGTCTGGAGGTCACTAAAAGAGGACATCAGAGCATCAAACTGTCAATCAACCCCAGGGAGGTCAACAAAGGGCTGAGTGCAGGCTCTCTTAAAGCAGGGCAGGTGAGTTTGGGCCTGTCGCCTTTAAGGGTACAGGTAAAAAGATTAACAATTTTACCCAGAAGTGGCATTGTGGCCAGCATTGAGGATCATGGCTACTTGGTAGACATTGGCGTCAGTGGAACCAAGGCATTCTTACCCAGACAGAAGGCAAAAGAGGACcttaaattggaaagcaatgAGCTGAAGGTAGGCCAGTATCTGAACTGCCTGCTGGAGGAGGTGAAGAACGAGGGCCGCATCGTCCGCCTGTCTGTCAGCCCCTCTGGCATTGCCCAGGCCGTGGCAAAGGCAGAGCAGGGCTGGACACTCAGCAACCTACTGCCCGGACTGGTAGTGAAGGCCCAGGTCAAACAGGTGACCTCTCACGGCCTCTTTTTGGGCTTCCTGTCCTCTTTCACTGGCTCTGTGGACTTCCTGCACATGGATCCAGAGAGAGCCTCCAGCTACAGCCCAGGGGATGCTTTGAAGGCCTGTGTGCTATACATCCTGCCCTCCATGCGGACAGTTGGCTTCAGCCTGCTGCCTCATCTGCTGCAGCCCGGAGTCGCCGTGGCGCCTGTGAGCTGCGACAGTGTAGGGGATGTGGTGCAGGACTGTGCTGTGAAGACTATGCAGCAGCAATCCGGGGCCCTGCTGCAGCTGCCCGGGGGGACCCTGGCCTTCGCACACAGAAATTACCTAAAGGAGTCCTACAAATCCCTGGACGTCAACCGCACCCAGCCTGGCACCTCTCATACCTGCAGGGTCATAGACTTCAGCCCCTTGGAGCAGATGCCTCTGGTCAGCCTGCGCAAGAGTGTGATAGATGCCCCTTTCCTCCGATACCAGGACCTGCAGGCTGGACAGCTGGTGGAGGGCACAGTGATCTCCCTGCATCCTTATGGCATGCAAGTAAAGGTGACGGAGCACATCCGGGGCATGGTGCCCCGGACACACCTGGCTGACATCATCCTGAAGAACCCAGAGATCAAGTACAGCGCTGGGGACCAGATCACATGTCGGGTCCTGTATGTTATATCTGAACAGAAGAAGCTAGTGTTGACCAGAAAGAAAACCCTGTTGGAGTCCATACTTCCCCGGTTCTGTACCTACGAGGATGCGAAGCCTGGCTGCGTGTCTCACTGCCACATCCTCGCTGTCAAGAACTTTGGATGCGTGGTCGGCTTCTACGGCAACATCAAGGGCCTGGTGCCCATAAAAGAGCTCAGCACAGAGCCCGCCATTGTCCCATCAGACCTCTTCTGCCTTGGCCAGGTTGTCAAAGCCAAAGTCCTGAGGTGTGACCCTGAGCAGGAGAAGCTGATCTTGTCTTTCAAGGCTGTTTCAGAAGTCGGGGAACGGACTCGGCCCGTCCAACAGGGAGTAAAGTATGAATTTGAAACTGGAAAGGAAGTCCAGCTGAAGATCAATAGCAAGCTCGACAATGGCCTGGATGTTTCCATTCTCCCAGAGGGGGCGGCTGGGTTCCTGCCCAAAGCACATCTCTCTGATCATGTGTCCAACTGCTCCATCCTGTGGGAGTGTTTAAGAGAGGGTGACATCATCTCTAATGCTGTGTGCCTCAGCAAGGCCAAAGAGCACATTATTTTATCCAAGAAGCCTGCGGTGAAGACGGTGCTTGAAGAAGGAGCTGTGGCCAAGACCTTTGCTGAAGTGCATACTGGGATGCTGCTGACAGGCTGGATCAAGAGCGTCATGCCCTATGGGGTGTTTGTGGAGTTTCCTTATGGCTTGGTTGGTCTAGCTCCCAAATCTGCCATGAGTAACAAGTTCGTTACCAACCCCGCCGACAACTTCCAGGTAGGCCAGACTGTGGTCGCCAGGGTAACCAACCTGGATGAGGACAAGAAGCGCTTCCTGCTGAACCTGAAGGTGTCTGAGGTCAGCTTTGCAGGGCCCAGCGTAGAGGAGCAGCTGGCTGTGTGCCTGCAGGAGAGGAGCACCGCCATGAACATGATGGCCAGTCGAGGGGACTCCGAGCTGGCCGAAAATCTTTCGACTCTGACGATCGGACAGAAGTTGAAAATGACAGTGGATGAAGTGAGAGATGATGACAGCATTTCATTCAAGTCAGACCAGTATGCTGGAGCAACCATACTGGCCACTAAGCACCACTTAACTGGTGTCACTGTGTCACAGGGTCAGAAGGTCACGGCCGTGGTGCTTAATGTGGACTTCCTCACTTCCCACATCCATGTCTCCCTCCTCCCAAAGCTGGTTTCCAAGAAACGAATGGCGCTCCAGCGAAATGCCAAAGTGGTTGCCACAGTGCAGTACATTGAACAGGACTTTGCTGTAATCTCACTGGGTGAAAGCAGCCAACTCACCTACATCCTCTTGGCTGCCCACCTCAATGACACCTTCCACTTCGAGTCTGAGAAGCTCAGTGTCGGGATGGACCTGATCGTCACTGTGGCCGAGCCCAGCTCTGAGCAGCTGGGAGGACTTCCCCTGGTGGTGCGGGGGTCTGAGAAACTGCCATTCGTCAGTCGAGAACGTAGGGAGTCCGTGAGCAAGGAGGCGAATCCCATCCGCAGCCAGCACTCGTTTGCCTTGGACGAAGAGGTCATCGGCACGGTCAAGTCCATCAAGCCCACCTGTGTCCTCCTGGCCTTGGATGGAGGGGTCACAGGCAGCCTCCACGTCTCGGAGATTCAAGAGAACGTCACACCAGGCAGTTTTCCCACCTCCACTCTGAAAATAGGCAGCACTGTCACTGCACGGGTCATTGGGGGCAAAGAGGCCAAAAGTCACAAGTTTTTGCCAATTACACATCCAAAATTCACATATACCATCCCTGAATTGACCCTTCTATCCAGCAACCCCACGGATGAGCAGTCACTCAAGTGTATGAAGACCTTTGAAGCCGGTCAGGAAATCACCTGCTATGTGTCCAAGTACAACCCTATGAAGAAGCGCCTGGAGGTCGATGTGAACTTGCTACTCGCTGGGAAAGTGGAATTGCTGGCAATGAGCCTTAACCCTAAAgaGATTAAATATCCAAAGAGGTATTTTAAAGAGGGGCAGGCTCTGAAGGCTACTGTGGTCGGGCCCAACCCTAGCAGAAAACAGCTTATTCTTACTCTCACAGGTATGCACAGCCTGACTAAAGGAGTTCTCACTCTGGGGGTTATCGTCAAAGTGGCCAGCAACACTGGCCTGACCGTATCGATGCCTTTTGCAAGGTCTGGCCGGGTGTCAGTCATGGACCTCACCGACTCCTACAGGCCCAAGCCACTGGACAAGTATAGCGTGGGTCAGGTTGTTAGGTGCTGTATTATTGAAGATGATGACAAAAAGTTCCAGCTGTCCCTGCGGAAGTCCAGGACAAATCCTAAGGCCAGTAATGTTTTGAAAGACCCAGAAATCCTCTCTGTTGATGACCTGAAGATAGGCCAGACTGTCCGTGGCTATGTGAAGTCTGTAGCACCCTGTGGTGTCTTCATTagtgtgGACAAAAAAAACGGTCACGTGGAGGTGTCATTTCTCCCCGAGGACACTGGGAAACCTGATGTCATCCCCGAATCTCTTGGTTTGCCTCGGAGGTTGAAGACTGAGGACAAGGAAAATCGTGAATCGGTCAAGAGGACGCGAAAGAGGGCGACCTCAGAAATCCAGCAGGAGGTGGTAGCTGAGAAACGGAAGAAGGAGAACGACAGTGGGGTGGAGGCCTATTTcagggaggaggatgaggatgaagacgcacacgcacacccaAAGGCAAGTTTTGAAGAAGGATGTTGTACTCGAGGAGCGTCTGTGGCACCCCAGAGGCTTCAGGTCACCAGTGGTTTCTCATGGGACACGGCCCTCAGCACTCTGCGACCGGCCACCATGGGCCCTGAGGACGATGACTCCAGTgaggcagaggaggagaaggaatgCAAGAAGCCCCAGAAGACAAACAAGCGTGAGAAAGTGGAAGAGAGGCAGCGTGCAGAGAAGGAGCTGCTGCGTGTGGAGACTGAGCTGATGGACTCCGGCCGCCGGCCCCAGACCGCCAATGACTTCGACCGGCTGCTGCTGAGCTCCCCGGACAGCTCCCTGCTGTGGCTGCAGTACATGGCCTTCCACCTGCAGGCCACTGAGATCGAGCAGGCACGAGCTGTGGCCGAGAGGGCCCTCAAGACCATCTCCTTCAGGGAGGAGCAGGAGAAGCTGAACGTTTGGGTGGCTCTACTGAACCTGGAGAACCTGTATGGGACTGTGGAGAGCCTGCAGAAGGTGTTTGACCGAGCGGTGCAGTACTGTGAGCCCCTGCCTGTCTTCCAGCAGTTGGCTGACATCTACGCCAAGTCCAACAAACACAAGGAAGCCGCCAGCCTGTACGCCAGCATGCTTAAACGCTTTCGCCAGGAGCGAGCAGTGTGGCTGAGCTATGGCACCTACCTGCTGAAAAATGGCCAGAAGGACGAAGCACAGAGGCTGCTGCAGAGGGCGCTCAAGAGCCTGCCAAACAAAGAGCATGTTGACTTGATTGGCAAATTCGCCCAGCTAGAGTTCCAGAACGGCAGCGTGGAGCGCGGCAAGTCCATGTTCGAGAGCATGCTCAGTAACTACCCCAAACGCACCGACTTGTGGTCCGTCTACATCGATCTCATGATCAAACACGGCTCCCAAAAAGACATCCGCAATATATTCGACCGTGTGATCCATCTGAGCCTGTCTGCCAAGAGGATCAAGTTCTTCTTCAAGCGCTACCTGGACTATGAAAAGAAGCACGGCTCGGACGAGAGCGTACAGGCGGTGAAAGAGAAGGCCCTCGAGTACGTAGATGCCAAGGGCTCCGCGGCTACCCAGTGAAGCAGAGGCCTGTAGACGTACAGTGCTGCCGAGGTCTTCCCTCTGACTGTCCTCGCACTCTCACCACACTGGACAAAACTGGCCCTGTACCATCTTAactgtaaatggaaaaaatgatgGTTTTTGCATATTGActgatttaaaattaagttttaatctGAATCTTGTCAGGTCAGTTTAGCAAACAAAGAAAGATCTTGCCTTCTTCTCTTGTATCTCATAACAACTATGaataggtatgtatgtatgtaaggtACTTTGGTACTTGGTTATAGTCcattcagtttagttttttactttCCTAGTCTGTTTTCACAACCTGAGCAAAACCAGAAGTTTCTGCCTCATATAATGAAGCCAACAGTGAAACCTGATTAGTGTGAAAGAAGctgaaatctttttttcttctacgAGCCCCTCAAGTATAGTtctgtccattttgttttgttggaatATTTATGGAATTTTGTCATCTTTACCTCTTTAACACCCCAGTTTTATGGAAGACGTACATCTTAAAAGGTTTGAAGAGGGAAAGGGTTTAACTGCTATAGTAGAACTGTGAATGGATATCGGTAAGAAAGGCTAAAGCTTGGAAATCCTCCTTTTTGAGAACAGTATAGtcataactgtatttttattctttttgtgATTAAACTGTTGCCACAGCAATATTTTTCATGgctatatttatattctgaaatgaCTGGTGATCATtgaacagagaagaaaaataagtatgAATTTGAATCTTTCTGTACAGTATCTTCTAGAAAACTGCATAAATATTAGGATTCAATGGACaagtggtgttttttgtttacgGGGTACACATTAAAAAGGCTTGTGGACTTGTGC

Function

GO: NA

KEGG:

id description
K14792 RRP5, PDCD11; rRNA biogenesis protein RRP5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 34774 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 84956 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 796403 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1327205 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1328910 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 526641 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 721232 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 1000909 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 1005458 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 1103965 20758119 ~ 20758457 (-) True G142417
AMCG00003318 mRNA downstream 47865 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003320 mRNA downstream 64356 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003319 mRNA downstream 145686 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003317 mRNA downstream 171023 19456531 ~ 19462865 (-) True AMCG00003317
AMCG00003314 mRNA downstream 219066 19402585 ~ 19414822 (-) True AMCG00003314
AMCG00003326 mRNA upstream 2511 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003330 mRNA upstream 45832 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003336 mRNA upstream 93272 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003337 mRNA upstream 147925 19802079 ~ 19820633 (-) True AMCG00003337
AMCG00003335 mRNA upstream 175034 19829188 ~ 19847399 (-) True AMCG00003335
TU178878 other downstream 64273 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 67301 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 70610 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 79776 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 89204 19543648 ~ 19544684 (-) False AMCG00003320
TU179004 other upstream 159988 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile