RNA id: AMCG00003328



Basic Information


Item Value
RNA id AMCG00003328
length 876
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00003328
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19662084 ~ 19677407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atggagAAAGACAGTAGCCAGGAACTCTCGGGAGTCACTGATGAGGGACACAAGGGAGAACCATCTAAAACTGCAACCGTAGAGAAAGGAGCGGAGGAGTCGTCGGAGAATGGGTCGGTGGCCGGAGCCGGGCGCCAGCCTCAGGGCGCCGACTTCAATTTAGAAGCGCCCTTGGGTGGGTGCGAAAACGACGAATCTGACGAGGAGTCTGTGGCCTATGGAGGGGACTCCGGTGATGATCACGACGAGCGCACCCTGCCTCTCTCCGAAGTGTTTCCCTACATCCGCTGCACCCTGTGCGATGGCTACTTCATAGACGCCACGACCATCACAGAGTGCCTGCACACATttTGTAAAAGCTGCATTGTAAAACACTTCTTCTACAGTAACAGATGTCCCAATTGCAATGTGGTTGTCCATCAGACACAACCCCTGTACAACATCAGACTGGACAGACAGCTGCAAGACATTGTGTATAAGATGGTCCCACATCTAGAAGAAAAAGAGAGAACACGAATGCATGAGTTCTACAAAGAAAGAGGACTTGAAGTACCAAAGCCAGTTGTGAAAGCCAGCAAGCAGAAGAAAGGCCTATTGCCCCAGTCAGTGTTCTCCATCCCCCCTGAGATGGATGTATCTCTGCTGCTGGAGTTTGTGGGggcAGAGGAAGGAATTGACAATTACAAGCCCCTGGAGAGAAAGTATGTGCGAGTGTCTGGAGAAGCCACAATCCGCCATGTGGAGCTGTTCATCAGACGGAAAATGGAGCTCAATCCAGGCTGTCAGGTGGATGTTGTTTGTGGGGACCATCTTCTGGACAGGTACCAGTCATTGAGGGAAGTGCAGAACACCGTGGGGGACAGTGCATTGCAGGTT

Function


GO: NA

KEGG:

id description
K11470 PCGF6, MBLR; polycomb group RING finger protein 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178921 lncRNA upstream 5929 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 29011 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 45517 19616261 ~ 19616567 (+) True G142205
TU178883 lncRNA upstream 67817 19593878 ~ 19594267 (+) True G142194
TU178859 lncRNA upstream 120837 19541042 ~ 19541247 (+) True G142174
TU179058 lncRNA downstream 450960 20128367 ~ 20128715 (+) True G142340
TU179072 lncRNA downstream 596926 20274333 ~ 20274616 (+) True G142354
TU179095 lncRNA downstream 918063 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 967074 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 1068138 20745545 ~ 20749364 (+) True G142412
AMCG00003324 mRNA upstream 3607 19651176 ~ 19658477 (+) True AMCG00003324
AMCG00003323 mRNA upstream 28934 19619598 ~ 19633150 (+) False AMCG00003323
AMCG00003322 mRNA upstream 48061 19610754 ~ 19614023 (+) True AMCG00003322
AMCG00003321 mRNA upstream 56663 19588634 ~ 19605421 (+) True AMCG00003321
AMCG00003316 mRNA upstream 88110 19569804 ~ 19573974 (+) True AMCG00003316
AMCG00003329 mRNA downstream 32789 19710196 ~ 19728221 (+) True AMCG00003329
AMCG00003327 mRNA downstream 50869 19728276 ~ 19741080 (+) True AMCG00003327
AMCG00003332 mRNA downstream 141611 19819018 ~ 19823045 (+) True AMCG00003332
AMCG00003331 mRNA downstream 179973 19857380 ~ 19862641 (+) True AMCG00003331
AMCG00003340 mRNA downstream 278362 19955769 ~ 19977915 (+) True AMCG00003340
TU178898 other upstream 29011 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 124993 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 969880 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 1983562 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3102878 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile