RNA id: AMCG00003330


Basic Information

Item Value
RNA id AMCG00003330
length 4314
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00003330
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19699986 ~ 19706889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGTTCCATCTAGCAGTACCTCCCGGACTGTAAAACATTTCCGTATGAAACTTATAACAATATCAAAGAGTGACatcaaaatgtgtcattttttaaaaataatgtgttatggTTCTTAATATTCTTATGCGAGTATTGATCAAACTAAAACATCTACAGCGTAGTCTACTTTTGTTGCCTTGGGCTGAAGTTAATTATTGATTGGCACGGtcctggtatatatatataaggcgCAGTGGGTGCTGCACTCTTTCTTCTGAAACGCCAAGATGAGTTACGGATCGGACTACTACATCTCTTCCTCCTACCGGAAGATTTTTGGGGACTCCCCTCGCTACTCAGCATCTCCCTCTCGGCTGGGTAGCGCCTCCTCCTCCCGCAGCTCCATCTCCTCCAGCGGCTTTAGGTCCCAGTCGCTCTCCCGGAGCAGCGCCTCTTCCCTAGGCTCCTACAGGAGATCTGGACACTCTTCTTTCTCACCGGGAACCGGCGAAAACCTTGATTTGGCGCAGACGTCGGTGCTCAACAATGAGTTTAAAATCATCCGAACaaatgagaaggagcagctccaGGGGCTCAACGACCGCTTTGCCATGTTCATCGATAAGGTGCGCACCCTGGAGCAGCAGAACAAGGTCCTGGAGACCGAGCTGGTGGCGCTGCGGCAGAGGCAGAGCGAGCCCTCCCGACTGGCGGAGATCTACCAGCAGGAGATCCGAGAACTGCGCTCTCAGCTGGAGGAGGTCAACGGCGAGAAGTCGCAGATACTCATCGATCGGGACAACATCGAGGAGGACCTGCAGAAGCTGAGAGCCAAGTACGAGGATGAAATCAGGGCTCGGGAGGAGGCCGAGCAAACCCTGAAGGCTTACAAGAAAGACGTGGACGACGCCACCATGGTGAGACTGGACCTGGAGAAGAAAGTGGAGTCTCTGCTGGACGAGATCTCTTTCCTGAGGAAGGTGCATGAGGAAGAGGTGGCCGAGCTGATGTCTATGATCCAGGCGGCGCAGGTCTCGGTGGAGATGGAAGTCTCCAAACCGGACCTCACCTCCGCCCTGAAGGAGATCAGGGGCCAGTACGAGTCTCTGGCCTCTAAGAACCTGCAGTCCGCCGAGGAGTGGTACAAGTCCAAGTTTGCCAACCTGAGCGAACAGGCCGCCAAGAGCAACGATGTGATCCGGGCGAGCAGGGAGGAGATCAACGAGTTCAGGAGGCAACTTCAGTCCAGGACCATTGAAACTGAGAGCCTGCGTGGCACCAACGAGTCACTGGAGAGGCAGATCCGGGAGATGGAGGAGAGGCACAATGCCGAAATTGGGGGATACCAGGACACCATCGGACAGCTAGAGAACGAACTGAGGAGCACCAAGAGCGAGATGGCTCGCCACCTGAGGGAGTACCAGGACCTGCTGAATGTCAAAATGGCTCTGGACATTGAGATAGCGGCCTACAGGAAACTGCTTGAAGGTGAGGAGACCCGTTTCAGCACGGGCATCAGCCTCCCCACCCCAAATCTGGGGCCTAGCATGAGCTACGGCTACCAGACGCGGGTCTACTCCAGCTCCCCTAAGACCACCTCCGccaagagggaggagaaggaggcagagCCCCCTGCCAAGCCCACCAAGGCTGCCACCCAGCGCGAGACCTTTGAGGAGATCATCGAGGAGACCGTCTCCACCAAGAAGGTGGAAAAGACCGAGATGGAGGATACCAACCAGAAAAACTAAACTGCCCCAatccccaaccccaaccccccacacAACCATCTTACTTATACATCCACCATCCCAAGAACAGGCTCAGAGAGGAATCCCTACACTTCACCCCATGACTCCACAGTCTGACTGCAGTCATGTTTGTCACTGTCCTATTCCTGGGCAAGCTGTGCACTAATGTCCTCATAGACACAGAGCCCCTTGTTCTCCACAGTaagatcaaatatttatttcacaatcaCAGAGTGAGCTGGATTACAGTATGTGTTCTCCACAGATGCCAACCAACAGGCAGATCTAAACATGCTTGCAGGGCTTATAAAGTACCTCAGACACATTTCAGAGGGCATGCTTGTGCCATACACAGTAAATGGAGACCACATCACAAGTATACCCAGCTTCACTAATACACAACTAAAGAGTTAACACACTTGTCCATTTCATCCTAGTGTGAGTGTATCCATAGATTGATAGTGATAGTAGATAGTTGATGTTgtaaatgcagaaatgtttaTCTCTAGAATAAGGAACACCTTGAAGTCATATGAAATGACATGTGagattatttagatttattcACCTCTAGGTGTTTTTTGAAGGCATAACTAGTCTAGCCACTGTTAATTCAACCCATCTGTTAATATTGGTTGTACAGTGCAATTGTATTTTCCTACAATGAACATACTGTTAAATGCCTCTCCGTTACTAACCAAATCCATCATGTTCCTGTTTCAGGATGTGCAGTTCTAAGACAAACTCCTCTCTGAGATTGCTCTTGGTATTTAAAACTGTGAGCCATCTGTTCTTCTCATCCCCTCctgaaacaaggaaaacaaaatcaaccatTAGATGCATGTTGTGCTTTTCATGTTTGCATGGTGATTCTGTGTGGGCCATTGACTGTCCTCACGTGACCTTAGGTCTCCTTAAATTGTCATGTTATCAGTCACAGTGTTTCAAATTCATTTCCGAATTTAACACCAGAATTGCAAAATAGGTGATGGTTACACAACAAACTAATCTGTGCATAAGACAGCTCTGGAGTCTACCACACAGCACTGCCACAGTCGTTTACAATGCTGGCCAGAGCTCAACTGATAGCTGAGATCTGATTGAGGGcacgtttgtttttttaagagccTCAAAAAAGCACCTTACTTACTGACTCCCTTAATGCTACAGAAAGTAAAATCCCTCCCCACCATAAATGCTTGTCGTTATTGCACTATATGTGTAGGCAAGTATGCAGAACAACTTGATTTCGAAGAGCTAAGGAAATCAGGGATGCTTCTTGAGGTTTTTAGATACGAATGTTATCCTAAATCTCATCTCAGTGATGTCTGTAGGACTCTTGAACTGTGGTGACCGCACTATAGGCCATCCCTCTTAGCCTTAGCAATACGAAAGACTAATTGAAAGACTTCATTAGCCTTAAAACTGTGTTTCACTTTGCTCAGCTACAGCTGCTAGTCTGGACGAGGTGCATATTGTCCTCTCAAAACAGGGGTTGTATGTCAATGTGTTGAGTATCCTGATTTACAGAGAGCAACCTTGAAGCACGGCTTGGGAGAAAATGGACGAATCATTTTAGTTTAAACGGACATTGCCTCACATTCAGTACACCTGTATTTAGATGTAAAAATGACACTTTATTCTTACATCTTACTACTTAAAACTATGGATAGTCTTCATTGTGTAAGACATTTGCCTATCTATGCTACTTAGTAGTAGCTACTGACACTGTATTAAATCCTTTGCAGTTGCAGCAGAGGATTTAGTTTTCAGCTAACTAcagtaaaaatactaaattgtTTCACTTATCTGCCATGGAATCACCTATAGTAGCATCACAGAAACCAAATACAGACCTCCAAAGTGAACCTTCTACAGTACTTGGGCCAAGGAAGTGATGTACTCCATACTGTGTGTCAAACTGTGGGAAGGTTTAGTGTGCATCAAAAAATCTCCCTCATTACAACCCATTACACAATACTCAAGAGTCAATGGACGCTCAATGTTGCTCTCACTCAGCATGTTATGTACATACACTCATATTCACGCGTATTGTGGTATTTTACATCAATCCAAAATAGGAGAGAAACATTTGCTTTCAGAGCAATGCGGTGACAATGGCTTTAGTATTTGACTTGAGCATGTCGACAGGACGTGAGACACAGACATGGGTGACAGTGGTAAACATTACTCCACACTTTTTTAAAAACCACTAAGATTGCACTGCCAAACTTTTTCTAATGCATCTGTGGCcagctttcattaaaaaacgACGACAAGGACACAAACTTTTCAACTCATTCTCtctacatatatttaaaattacatgaaattaaTGCTGTAGGTTTTACAAAATGCCTTAATAACACCAGCAGCTTTCTGACTCTGGCGGtctgtgtgcttattgtatgaTGCTGTTAAGGATGTGTGGCTTAGGTTCTTTTCTCTCCCCACGTGAAACCAGAATGAAACTTATAATTCTAACACTAAAAATGATAGTGATTGAAAGTAGGTGATCTTAATTGTTCCTTTGTTCCTGACTGCTCTTAACacatatcaataaataactTGACACAAAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 100872 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 151054 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 862501 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1393303 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1395008 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 473906 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 668497 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 948174 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 952723 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 1051230 20758119 ~ 20758457 (-) True G142417
AMCG00003326 mRNA downstream 38337 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003325 mRNA downstream 45832 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003318 mRNA downstream 113963 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003320 mRNA downstream 130454 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003319 mRNA downstream 211784 19484791 ~ 19488202 (-) True AMCG00003319
AMCG00003336 mRNA upstream 40537 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003337 mRNA upstream 95190 19802079 ~ 19820633 (-) True AMCG00003337
AMCG00003335 mRNA upstream 122299 19829188 ~ 19847399 (-) True AMCG00003335
AMCG00003333 mRNA upstream 143436 19850325 ~ 19856866 (-) True AMCG00003333
AMCG00003334 mRNA upstream 156884 19863773 ~ 19867810 (-) True AMCG00003334
TU178878 other downstream 130371 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 133399 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 136708 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 145874 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 155302 19543648 ~ 19544684 (-) False AMCG00003320
TU179004 other upstream 107253 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_08184916_08188512.mRNA True 2755 mRNA 0.50 4 CI01000006 8184799 ~ 8189299 (+)