RNA id: AMCG00003331


Basic Information

Item Value
RNA id AMCG00003331
length 2083
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00003331
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19857380 ~ 19862641 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaGCCTTACCTCGTTACACACAACTGCCTTAAAAGTTACAAGTTTAAATATCAAACCACTTCCGGGTCAACTACAACATGCATGGTCTAAACAGTAAAAACAAGTAATGgcaattgttattttaatatatacaatataattttcaaagATTTTGGTGTAATTATAGATACTCATAAGACGATCAGTAGGGTATTtgcattaaattgtattttaacagttttggtTTCCTTGACTACCGACACAGCGTTGCGGAAGTAGGGCAAGTATCGGTTTGGTCAACATGGCGGTGCAGTGCTGGCTGGACTCGCTGAAAAACGCCAAGAAAACAGCTTTATTACAGGATgGGAAAAGGAAAGTACATTATCTGTTTTTTGACGGCAAAGAATTGGCAGAAGAGTACGACACGAAGACAGACGCACTGATCGTTCGAAAATGGCGTGTGAAGAATGCCCTGGGTGCGCACGGCCCATGGGAGACTGAGGTGGGGGAGACAGCACCCTGCACTGTGGCTGCTCTGGATCCTGAGCTCATAAAGGAGAACAGCTCAAATCCTTTGTTTATGCGCAAAGATACCAAGACTAGTTTTCAGTGGAGAATACGCAACCTCCCCTATCCCAAAGATGTCTACACCGTTTCTGTGGAACCAACTGAACGAAGCTGTATCGTCCGGACAACcaacaaaaaGTATTACAAGAAGTTCTCTATCCCAGACTTGGATCGGTGTCAGTTGCCTTTGGACAGCTCTGCCCTCAGCTTCGCCCATGCCAATAATACATTGATCATCAGTTACAAGAAGCCCAAGGAGATCCTGGCCATGGAGCAGGAACTGCAGACCGAGCTTAAAAAGATCAAGGTGACTTGTGATGGGGATGTGGACTGTAAAACGCAGTGAGCTGCAGTGGACACAAAGACGGTCACAGACTCCAGACATGAAGACCAACTGGACAATAACAAAGCATCTTGACACACTGGCTTCAATTCTGCATACAGAAAAGGCTTCTACATATTATACTTCAATTATCCTTGTTTTTAAGGGTGGGGGAAGGCAAATAAAGTTCATGAATAACAAATATAGGTTCTTATACTTTTGATATTTTCCAAGCACACTATAAAGTAATTGTAATGGATAAGGTTTTGGTAAGTGATATATGAGAACTTTGTATTAGTTGCCACAGGTTTAATACTGTAAGGAGACCTTCCTCTGAAAATGAATTGAGGatttaaactttatttactttcattCTGCCTAGGTTTACTTTTCAGCTCTGCAGTCATTCATTGTATGCACTGCTTCTGTTTAGGGCTTTgtctacattgttttttttccccctttttagCCAGCCTAGTTTAATATGAAGTGTTACTGAATTCAAGCGTGTATAAACAGAGGCATGCAGGCTtgcacatgaaagaaaaaaagaaactgaaaaccttgttttaatttcattaaagtCACTTTGAttatgtgtttgaaaatgtggCAAGTGACTAATAACGTCTGATCCCAcaatgtgtctgtcagtgttcAAACTGACTGAGGTGCGATCAGGCAACACGTTTCAGTGTAAACTGGAATAGCAGAGAAATCCCTGGGCTTTAACTTCTATGGAGCAAGAAATTTGTTTTCATAGGCACAGGATTAACAGATGTCAGGGCATGTGTTGGCATGTTGGCTGAGTAACAATGATGTGTAACTCCTGTTAAGTACCTGTAAACCACTGTAAAACGGGACAGTCAAATGCAGAAGAGCATTTCCAAGACAACATTCCACTTGTTAGCCCTAGAAGCAACAGATGTCAGACTCGCAGCACATGCCTCGGCCTGGCCACCCACCTCTCCACCCTTAAAGCTGGaccaaaacacatttacatgaTCTATAATGACTGAAGTCCTACAGGCATCCTACTTGTGATACTTATGTCCTCATGAAagtagaatatataaatatatatattcctcatatataaatacatagtaTTACAACTGACTTTGCAAGACAGTTCAAAAACTTTTCCTGTTagtaaaatgacaataaaaagcCCAAACATTtgtcaaactgaaaacatacaGGTTTTTAATAAA

Function

GO: NA

KEGG:

id description
K20800 DPCD; protein DPCD

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178921 lncRNA upstream 201225 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 224307 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 240813 19616261 ~ 19616567 (+) True G142205
TU178883 lncRNA upstream 263113 19593878 ~ 19594267 (+) True G142194
TU178859 lncRNA upstream 316133 19541042 ~ 19541247 (+) True G142174
TU179058 lncRNA downstream 265726 20128367 ~ 20128715 (+) True G142340
TU179072 lncRNA downstream 411692 20274333 ~ 20274616 (+) True G142354
TU179095 lncRNA downstream 732829 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 781840 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 882904 20745545 ~ 20749364 (+) True G142412
AMCG00003332 mRNA upstream 34335 19819018 ~ 19823045 (+) True AMCG00003332
AMCG00003327 mRNA upstream 116300 19728276 ~ 19741080 (+) True AMCG00003327
AMCG00003329 mRNA upstream 129159 19710196 ~ 19728221 (+) True AMCG00003329
AMCG00003328 mRNA upstream 179973 19662084 ~ 19677407 (+) True AMCG00003328
AMCG00003324 mRNA upstream 198903 19651176 ~ 19658477 (+) True AMCG00003324
AMCG00003340 mRNA downstream 93128 19955769 ~ 19977915 (+) True AMCG00003340
AMCG00003343 mRNA downstream 263503 20126144 ~ 20127556 (+) True AMCG00003343
AMCG00003349 mRNA downstream 541055 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003348 mRNA downstream 629718 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003351 mRNA downstream 897679 20760320 ~ 20764685 (+) True AMCG00003351
TU178898 other upstream 224307 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 320289 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 1165176 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 2178858 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3298174 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile