RNA id: AMCG00003333


Basic Information

Item Value
RNA id AMCG00003333
length 1906
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00003333
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19850325 ~ 19856866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTTCTTTTCAGGCCCTGTCCGTCACTCAGGCTGGTGGATGTATGGAAGCCCGTggtattttgaaagcatttcccAAAGTGAAGAGGCCAGGCGCTCCTACAAAGAAGGATGAACCGgtgaataaaagaaaacaggaggAAATGGTCAGCGGTCATTGGTTCAGTGGTGTGTCTGCGCACATCATCCCAGCTGGGATTGGGAATGCCAGGACCACCATCTTTCAGAAACAAATCATCCAAAATGGTGGCCAGGTCAGAGACACATTCTCTCCCAGTGTCACTCACGTCATTGTGGATGACTCCATGGACTGCCACCGTGCTTTGCGCCTGCTGAAGATTGACAAGCTTCCCCCGGCGGTTCAGTTGGTCAGATGCTCCTGGCTGAGTCTGTGCATCACTGAAAAGAAGCTTCTCAGCACTGCTGGCTACAGCCTCTTCATGATTGACAGGCACCTGGATTCAAGTCATGAGGGTGCAAGAGCAGATTCCCAGCCTGGTGATGGACCTGTTTTGGGGACAAATGATAGTCTGCCGCAGTTTAATACTGATCTGAACAAAGAGAAGAGCACCATTCAGCACACGACCTGTGATGATGAAGGGAGTGATGCAGAAGAGACGAGTGTCTCCCAGAGTGACCTGGAGGCTCTGATCTCAGGGCAGTACCCCAGTCCTGGGAAATCCAGCTCAGCACAGCCCTCTGTCTCTGCGAAATGGGTTTGCGCTAACTCCTCCCAGGCCAAGAAAGACAATCATAATCAGCACATCACAGACAAGCTCGAGGTTCTGGCCAAGGCCTACACCCACCAGGGGGACAAGTGGAGAGCGCTGGGATACTCCAAAGCCATCAACGCACTGAAGAGCTACCACAAGCCTGTCACTTCATATGAGGAGGCCTGTAAGATCCAGGGCATTGGGAAGCGGATGGCAGACAAGATCAAGGAGATCCTAGAGAGTGGCCACCTTCGCAAGCTGGACCACATTGGAGAGAGTGTGCCAGTGCTGGAGCTCTTCACAAACATCTGGGGGGCTGGGGCAAAGACTGCACAGATGTGGTACCAACAGGGATTTCGCACTCTGGAAGACATTCGTACCAAAGCCACTCTGTCAAGTCAGCAGGCAGTTGGACTGAAACACTATGAGGACTTCCAGGATCGCATGCCAAGAGAGGAGGCCGCTGAGATTGAAAAAACGGTGAGGGAAGCAGCCCTGCGTTTGAATGGGGGGCTACTGGCGATGGCGTGTGGCTCGTACCGCCGAGGGAAGGCCTCTTGTGGAGATGTGGATGTCCTCATCACTCACCCCGATGGCAAATCTCACAAAGGAGTTTTCAGTAAAATACTGCACAGTCTCCATCAAACTGGCTTCCTGACAGATGACTTGGTGAGCCATGAGGAGAACGGGGAGCAGAAGAAATACCTGGGGGTGTGTCTCCTTCCAGGCCTGGGACACCGCCACCGCAGGCTGGACATCATCGTGGTGCCTTACAGTGAGTTTGCCTGCGCTCTTATGTACTTCACCGGCTCGGCACATTTCAACCGCTCCATGAGGGCCCTGGCCAAAACCAACGGGATGAGCCTCTCCGAGCACTCACTCAACAAAGATGTGCTGCGCACAGGCAGTGTGAAGGTCAGCACCGGCCTGCCCCTGCCCACGCTTACGGAGAAAGACATTTTCACTCACCTGGGCCTGCCCTACAGGGAACCACAGGAGAGGGATTGGTAAAACAACCATACGCAGCTGTCTAACAATTTTacctttggttttattttggtcttAAGGATCTTAATGGTGTGTTCCTTGGCTTGTCTTGGAGAGCTGCTAGATACCAGGTTTATTTGTGAGCTGCAGGGGAGGAATTcagggatttttttcttttcattgttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K03512 POLL; DNA polymerase lambda

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 251211 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 301393 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 1012840 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1543642 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1545347 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 323929 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 518520 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 798197 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 802746 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 901253 20758119 ~ 20758457 (-) True G142417
AMCG00003335 mRNA downstream 2926 19829188 ~ 19847399 (-) True AMCG00003335
AMCG00003337 mRNA downstream 29692 19802079 ~ 19820633 (-) True AMCG00003337
AMCG00003336 mRNA downstream 88031 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003330 mRNA downstream 143436 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003326 mRNA downstream 188676 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003334 mRNA upstream 6907 19863773 ~ 19867810 (-) True AMCG00003334
AMCG00003338 mRNA upstream 38445 19895311 ~ 19900232 (-) True AMCG00003338
AMCG00003339 mRNA upstream 53410 19910276 ~ 19929271 (-) True AMCG00003339
AMCG00003342 mRNA upstream 138153 19995019 ~ 20005313 (-) True AMCG00003342
AMCG00003341 mRNA upstream 162992 20019858 ~ 20033589 (-) True AMCG00003341
TU178878 other downstream 280710 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 283738 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 287047 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 296213 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 305641 19543648 ~ 19544684 (-) False AMCG00003320

Expression Profile