RNA id: AMCG00003335


Basic Information

Item Value
RNA id AMCG00003335
length 876
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00003335
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19829188 ~ 19847399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCTGCTCCTGTTCCACGCTGTACCCGTCAGCCTTACTACAGAGAAGACTGCCACAGAGatggatGGGTTCTGGCTAGTCTGGACCATTATCATCATCTTGAGCTGCTGTTGTGTCTGCCACCACCGACGCACCAAACACAgattgcagcagcagcagcggcagcacGAGATCAACCTCATCGCATACCGGGAGGCGCACAACTACACCTCCCTGCCCTTCTATTTCAGTAGTGCCTTGCAGCCCAGCCCTCCAGCTGGTGCCAGCCCTCAGAACCCTGAGCTGCCAGACGGACGACCTTCCTGCACACAGACTGGTCCTCCTGGCCCCACCCCAGATGTTCTTTCTCCGCAACCCAGCCATGAGGAGCCCGAGCCCCCTGCTGGCTACATCCAGCGAGGTGACCGTAAAATCCACCTGGATCCTGAGCAGGGTGGCCACCAGGTGGCTTCTGCAGAGGACCCTCCATGCCGAGAAAAGGAAGCAGACTGCAGCAAGGAGCTGCTGAGGGACTTGGGCTGTGACAGCTGCCCAGAGGACAAGGAGAAGACACCAGGACGGCACCGGCGCTTCACGGGCGACTCGGGCATAGAGGTTTGTGTGTGCAGCCGGGTCAGGGAGGGCGAGGAGCTGAAGGAGCTGGACGGGCTGTTGGACGACAGCCTGGACGGGCCCATGGACTTCTGTGACAGCTGCACATCCTGCGACCCGCAGGCTCCCGGGGATGAGGAGCAGGGCCTTGCTGGCCCTGAAAGAGCACAGGAGCCTGGAGAGCTCCCCCTGGCCCGGCCCCCTGTCTGCCTACTGCTACACACCATCAACGAGCAGGAGGCCCCCCACCCACAGAACGGCAACACGGAGCCCCATACCTGA

Function

GO: NA

KEGG:

id description
K24775 WBP1; WW domain-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 230074 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 280256 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 991703 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1522505 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1524210 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 333396 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 527987 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 807664 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 812213 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 910720 20758119 ~ 20758457 (-) True G142417
AMCG00003337 mRNA downstream 8555 19802079 ~ 19820633 (-) True AMCG00003337
AMCG00003336 mRNA downstream 66894 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003330 mRNA downstream 122299 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003326 mRNA downstream 167539 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003325 mRNA downstream 175034 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003333 mRNA upstream 2926 19850325 ~ 19856866 (-) True AMCG00003333
AMCG00003334 mRNA upstream 16374 19863773 ~ 19867810 (-) True AMCG00003334
AMCG00003338 mRNA upstream 47912 19895311 ~ 19900232 (-) True AMCG00003338
AMCG00003339 mRNA upstream 62877 19910276 ~ 19929271 (-) True AMCG00003339
AMCG00003342 mRNA upstream 147620 19995019 ~ 20005313 (-) True AMCG00003342
TU178878 other downstream 259573 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 262601 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 265910 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 275076 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 284504 19543648 ~ 19544684 (-) False AMCG00003320

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011899 True 1185 mRNA 0.57 4 NC_007124.7 28580357 ~ 28596765 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_10303346_10315263.mRNA True 2128 mRNA 0.50 6 CI01000012 10303163 ~ 10315900 (-)