RNA id: AMCG00003336


Basic Information

Item Value
RNA id AMCG00003336
length 1296
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00003336
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19747426 ~ 19762294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAAGGCACAGACTTGCAAAGGAGGGAGAGTGGCCCCACGGTGAGCCAGTCCTGCCCAGTCGGGTGACTATTCCCAGGATTGCTGACTCCCTGGCCTCACCCTCCCAGGGGCTGGCTGCAGGTAAATCCCACCTGGCTATAGTCCAAAGGGTAAACAACGAGGGAGAAGGAGACCCATTCTACGAGGTACTGGGTATCGTAACATTGGAAGATGTAATTGAAGAAATCATCAAATCCGAAATCCTGGATGAGACCGACTTGTATACTGACAACAGGACGAAAAAGAAAGTCACCCATCGGGAGAGGAAGCAGGATTTCTCGGCCTTCAAGCCGACAGACAATGAGATGAAGGTTAAAATATCACCTCAGCTTCTGCTGGCAACCCACCGTTTCCTAGCAACAGGCAAGTTCGGCTTATCACAGTTGGAAATCTCCCAGTGTGCCCTGTGTGGCTGGTGTGGGGTTATTGGGAGGGAGTCAAACAAACGAAAGGGACCAGCAATGGAAGTCCCCTGCTCAGGCTGgagaggtcagaggtcacagcgGGCTGACAGGGTGTCTCTCTCTACAGAGGTGGAGCCCTTCAGCCCCACTCAGATGTCTGAGAAGATCCTCCTGCGGCTCCTCAAGCACCCCAACGTCATCCAGGAGCTCAAATACGATGAGAAGAACAGGAGGACCCCCGAGCACTACCTCTACCATCGCAACAAGCCCGTCGACTACTTCATTCTCATTCTTCAGGGGAAGGTGGAGGTGGAGGCGGGGAAGGAGGGGATGAAGTTTGAAGCTGGGGCTTTCTCCTACTATGGGATGTTGGCTCTGACAGCCTCACCAGttcctctctccctgtctcgtACCTTCGTGGTCAGTAGGGCTGAATCTCTAGCAGGATCTCCAGAGAATAAATCTCCTCCGCGGCCCTGCGGTCTGAATCACTCGGACTCTCTGAACCGCAGTGACCGTATCGATGCCATCACCCCCACGCTGGGCAGCAGCAACAATCAGCTCAACGCCTCCTTCCTGCAGGTCTATGTGCCCGACTACTCAGTCAGAGCCATCACAGACCTGCAGTACATCAAGATCACCCGCCAGCAGTACCAGAACGCTCTGATGGCTTCTCGGATGGACAAAACGCCCCAGTCTTCAGACAGCGAGAACATTAAGATCGAATTGACTCTAACCGAGCTTCATGACGGCTTGCCGGACGAGATGGCAAACCTGCTCAATGAGCAGCAGAACTGCGTTGCACACAACAAATCCAACCACACTATGCACAACGAGGGCTCCATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 148312 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 198494 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 909941 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1440743 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1442448 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 418501 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 613092 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 892769 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 897318 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 995825 20758119 ~ 20758457 (-) True G142417
AMCG00003330 mRNA downstream 40537 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003326 mRNA downstream 85777 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003325 mRNA downstream 93272 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003318 mRNA downstream 161403 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003320 mRNA downstream 177894 19543637 ~ 19569532 (-) True AMCG00003320
AMCG00003337 mRNA upstream 39785 19802079 ~ 19820633 (-) True AMCG00003337
AMCG00003335 mRNA upstream 66894 19829188 ~ 19847399 (-) True AMCG00003335
AMCG00003333 mRNA upstream 88031 19850325 ~ 19856866 (-) True AMCG00003333
AMCG00003334 mRNA upstream 101479 19863773 ~ 19867810 (-) True AMCG00003334
AMCG00003338 mRNA upstream 133017 19895311 ~ 19900232 (-) True AMCG00003338
TU178878 other downstream 177811 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 180839 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 184148 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 193314 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 202742 19543648 ~ 19544684 (-) False AMCG00003320
TU179004 other upstream 51848 19814142 ~ 19876762 (-) False AMCG00003337

Expression Profile