RNA id: TU179004


Basic Information

Item Value
RNA id TU179004
length 1386
RNA type TUCP
GC content 0.40
exon number 7
gene id AMCG00003337
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19802079 ~ 19876762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttgtCACGGTTTGTCCTAATGGTCGCACCCGTTGTTTTCAGTTCTTCAATTTTAGCAGGATGGCTTCTCCAGAACCTCAGCCTCGCTTCGGACAGTCTGTGAAGGGTTTACTGTCGGAGAAAGTGAGCTCCTGCAGCGGGGACGTGATCGCCCTCACTCGCCAAGTGTTGAAGGGGTCCCGCAGCCAGGAGCTCCTGGGACAGGCAGCCCGGAATATGGTGATGCAGGAGGACGCCATACTGCATTCGGAGGATagCCTAAGAAAAATGTCAATTATAACCACCCACTTGCAATACCAACAAGAAGCCATACAGAAAAAtgttgaACATTCCAGAAATCTTCAGGACCAGTTAAATCACCTACTGAAATAAGAATCCACTGGAGCGGCCATTGGTCTAGTGGTTCTGCCAGGATGTTTGAGAAGGCCCCTACCAGGAATCGCCACTCTTGACTACACAGCATTGTCATGAGCAGTAAACCATGTTTCTGGATTTAGACCTTTCTTGAGTTTTGTTCCAGATTTTATGACTAAATGTCATTAATCCATGGAGCTCGgaaatgtttcatatttcacaCAATATGCATGACCTGTGAGACCTGTTCtgcattttgttacttttttccGTTTCATGTTAGGATGCTAAAATAATTCGGAACTCTTTGCCCTTTACGTGTAGCTGTATGTGTGTTGCTGTGGTAGTTCAGGCATTCAACACCCCAATGCTGCAAAGGGTTTACAAAAGCAAGAACGATATTTCAGAAACCACAaggaatattttgaaaaatgccaAGGCTGTTCAGAAGTAGTAGCTTGAGCCAGCAGAGCAACCTGGTTGGTTCAGTAGGAGACCTTGATGTGCGGACATTCCAAAGATttctaaaaaactaaaaccttgCTCAATGAGTTGATATgggtcttaaaaaaaaaaaaaaaaaacatgctgccTTGGCTCGGATATGGATATAAACTTTGTTGGAAGATAAAGACCAACAAAACTGTAGAATATGTTTTGTGTGGATGCCATCCAATGTGAGAATGCCTTCTTTGTGTCTCAAAACTAAGATGAGaggtttaatattaatacattgaatCAGCAATGAACAACAATGTGTCGCCAAGTAGCTGCCGATTAATTTCAGATTGTAACAGTTGCCCAGTTGGAATCAAACCGAGTATAATGGTGCGTAACCTGACACCAACCACTGATTTTTATCTGAATAGGACAACTATTTAGAATGTAAATaacagaacattttttatttattttctttgtttcggACATATTAAATCTGCCAAGCAATGATTATAGATTACATCAGCCTTGTTAATGTATGTTAATTTCTGACCAAGAATAAAGTGGAaatctgattgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 215028 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 265210 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 976657 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1507459 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1509164 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 304033 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 498624 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 778301 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 782850 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 881357 20758119 ~ 20758457 (-) True G142417
AMCG00003336 mRNA downstream 51848 19747426 ~ 19762294 (-) True AMCG00003336
AMCG00003330 mRNA downstream 107253 19699986 ~ 19706889 (-) True AMCG00003330
AMCG00003326 mRNA downstream 152493 19656665 ~ 19661649 (-) True AMCG00003326
AMCG00003325 mRNA downstream 159988 19633888 ~ 19654154 (-) True AMCG00003325
AMCG00003318 mRNA downstream 228119 19574925 ~ 19586023 (-) True AMCG00003318
AMCG00003338 mRNA upstream 18549 19895311 ~ 19900232 (-) True AMCG00003338
AMCG00003339 mRNA upstream 33514 19910276 ~ 19929271 (-) True AMCG00003339
AMCG00003342 mRNA upstream 118257 19995019 ~ 20005313 (-) True AMCG00003342
AMCG00003341 mRNA upstream 143096 20019858 ~ 20033589 (-) True AMCG00003341
AMCG00003344 mRNA upstream 282566 20159328 ~ 20165583 (-) True AMCG00003344
TU178878 other downstream 244527 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 247555 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 250864 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 260030 19552871 ~ 19554112 (-) False AMCG00003320
TU178860 other downstream 269458 19543648 ~ 19544684 (-) False AMCG00003320

Expression Profile