RNA id: AMCG00003340


Basic Information

Item Value
RNA id AMCG00003340
length 1734
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00003340
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19955769 ~ 19977915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAAGAGGGACCAAGAGATCAAAATGAATGGCAACATCACAGATGCTAAGTCTCCAATCACCACGGAAAGTGCAAGAGATGTCACTGCAGCTCTATTGCCTTCAGGAAGTTCTCAAAGCCATCCCCACATTGGAATAGTGTCCATTACTAAAACCAACTGTCAACCAGAACCAGACCTTAGCGTGGAGCAAGCATCTGGTGATAATGAATATTGTAGAACTGGGCCCAGGCTAAGTAATCTGAGTGACAATCTCAATTATCCTGCCAAAGTATGGGACCTTGGAAACAAAGGGATCTTTGAGACCGAGCTGAAACCAGAAACCCGTGAAGGGCTTCTGGTCACTGCAACTCATTTTCCTCCGAAGTCAGGAGAGACTGAAGAAGAATGGAATGACAAGCTATACCCTACACATGGAAATGAAGTACCTTCAATTGTGGGGACCTTCAACTCTCCAACTGAGATGATACAGTCAGCCGTCAGCTATTCATCTGGCAATCTTTACAAGTGTGAAGGCATGAAACTAACGTATTCCACGAAGAATGAAGCAAGAAAGAAGGATGCTTATGTGCCAAACTGTGAATACAAGACCAGCGGTGGTAGTATCACTCCAAACGAGGAAGAAGAAAGCACTGAAATCATTCAGAATCATGACCTGGCACCAGAAGAAACTACGCCAGATGAAAGAAGAGAGATAGATTCCTCTCCAACTGTACATGCTGTTGCTGGAAGTTCAACAGTTGAAACTTCCCATGAAGATTCCTCTGCAGATGTTCAATTTAAAGCAGAAAGCCCAGTTGTTTGTGAATCCTCCAGTATTTGGGGATTTCATTCAGACACAGATATGTCAACTAACTCTCCTGAAGATTCAGCAGCCAACGAACAACCTGAAAGAACAGATGAGGAGGCTGAAGAAGAAGATGGAGCAGAAGAGGTGGCCAACCACAGAGGAGATGCTTTGATGTCTGAAAATGAGAAAACTAGGAGTGATGAAGTACATGGCCAACCCATGGCTCAAAGCCTTGAAGGAACAAGTGCTAACTCAAGACATGCGATTAGTGCGAACCAGAAGCAGTCTGTTTCTGAGACCTTCATCAAGCCGTCAGTCGAGGAGAAGAACGGGAGTCTTCAGAGGGAATACACGCACAGGTTTCTCGATTCTCTGAGGGAAGCATATCTACACACATATTCAAAGCACTACTTCTATTTGATGGATTCTGGACTGGTTCTCTCCAAGGCCAAGTCTGAGAAGTTTGATAATAAAGTCTTGGTCACTATGAGAGATGGTGTGAAGCTGGCCCTGACCCCATCCACATGCAGTGACTACAGGTACCAGAATAAGGGTAACTTCTGCATCATCCAAAAGCTGAATTCTTGCTGGTATAGGGGCATTGACCTGGGAACTAAGGAGAAGTTCCTCATTAAACAGGTCGAAGTGGTGAACAACTGGAGAAAGATTTTGCAGAACTTCCTGTTTCTTCCAAGCAGCCCCTTCATTCTGCTGCCATATGCAGTAATGACAGACAGGAATGGATTCATCTACTTCCTAATGCAAGACCAAGACATTAAAGAGAAAAAGAACACGTGTTCCTCCAAAGCTTCTAAGATCACCTTCCTCTTTTCCTCCTTGGGATTGCTGCgctggacagagacagagtgtgTAGCGAGTTGTGTGAGGCTGTGGAAGAAGAGATTGGAGAAGGGTAGTACAAGCTTCAAGAACAAACCCTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178921 lncRNA upstream 299614 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 322696 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 339202 19616261 ~ 19616567 (+) True G142205
TU178883 lncRNA upstream 361502 19593878 ~ 19594267 (+) True G142194
TU178859 lncRNA upstream 414522 19541042 ~ 19541247 (+) True G142174
TU179058 lncRNA downstream 150452 20128367 ~ 20128715 (+) True G142340
TU179072 lncRNA downstream 296418 20274333 ~ 20274616 (+) True G142354
TU179095 lncRNA downstream 617555 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 666566 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 767630 20745545 ~ 20749364 (+) True G142412
AMCG00003331 mRNA upstream 93128 19857380 ~ 19862641 (+) True AMCG00003331
AMCG00003332 mRNA upstream 132724 19819018 ~ 19823045 (+) True AMCG00003332
AMCG00003327 mRNA upstream 214689 19728276 ~ 19741080 (+) True AMCG00003327
AMCG00003329 mRNA upstream 227548 19710196 ~ 19728221 (+) True AMCG00003329
AMCG00003328 mRNA upstream 278362 19662084 ~ 19677407 (+) True AMCG00003328
AMCG00003343 mRNA downstream 148229 20126144 ~ 20127556 (+) True AMCG00003343
AMCG00003349 mRNA downstream 425781 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003348 mRNA downstream 514444 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003351 mRNA downstream 782405 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003359 mRNA downstream 1173936 21151851 ~ 21177530 (+) True AMCG00003359
TU178898 other upstream 322696 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 418678 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 1263565 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 2277247 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3396563 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile