RNA id: AMCG00003342


Basic Information

Item Value
RNA id AMCG00003342
length 1524
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00003342
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19995019 ~ 20005313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCTGACCTCCTCCCTGCTTGCTGTGGCCCTGCTCACCTCGTTTGGCTCCTCGATGCTCTATGGCTATAACCTGGCTGTGGTCAATTCCCCTGCTGAGTACATTAAAGACTTCTACAACCGCTCGGCTGTGAGTCGCAACAACACAGGCCTAAATCAGGAGTCCCTGACGCTGATGTACTCGTTAACGGTGTCTGTGTTCGCCATCGGAGGGCTGGTGGGCTCCTTGCTGGTGGGCACTCTGGTCACCAGGTTTGGGAGGAAAGGGACTTTGGTCAAGTCCACGGTGCTGGTGTTCATTTCTGGGGCTCTGATGGGATTCAGTCGGATCTGCGGATCCCCAGAGATGGTGATCATAGGGCGCTTCATCACTGGGATACACTCAGGGATTGCTCTCAGTGTGGTGCCCATGTACTTGGGAGAGATTGCCCCGAAGAATCTGCGCGGCTTCCTGGGTCTCATGCCCAGCATCTTCATCTGCGTTGGGGTCTTCCTGGCTCAGATCTTGGGTCTCCATGAGCTGCTGGGGAAGGAAGAGCACTGGCCCCTGTTCCTCTCGCTCGTGGTGGTGCCCACCTTCATCcagttgctgctgctgccctggTTCCCGGAGAGCCCTCGCTACCTCCTGATTGAGAAACGTAACGTCCATGCCACCATCACAGCCCTAAAGTGGTACCGGGCCAAGTGTAACATCCAGGCGGAGGTTGAGGAAATGCAGGAGGAGCAGCGCTCTCTGTCCACCGTGGAGACGCTCTCTGTGCCCAGACTGCTGCTGGACTCCTCCGTGCGCTGGCAGGTCCTCTCCATCATCGTCATCAACATCGGCATGCAGCTGTCCGGCATTGACGCGATCTGGTTCTACACCAACACCATTTTTGAGAACGCCGGGATTGCCAAACCCCAGATCCAATACACAACGGTGGGAACGGGAGCTATAGAGGTCATTGCGGGTCTCATAGGGTGCTTCACCATTGAGCGGCTCGGGAGACGGCCACTCATGATTGGTGGATTCAGCTTCATGGGAATCTGTTGTGCAGGGATCACGCTTTCTCTGGTCTTACAGAGCCGTGTTTCCTTCATGCGGTACGTCAGTGTGGCCTGTGTGGTGGGAATCATCGCAGGGTTCTGCATTGGCCCAGCCGGTGTCCCGTTCCTGATGACGGCAGAGCTGTTCAAGCAGTCGCACCGGCCTGCAGCCTACACGGTGGGTGGCTCCCTCAACTGGATCTCCAACTTCACTGTGGGCTTCGTCTTCCCCTTCCTGCAGATGTCGGCGGGGGCCTTTTGCTACCTAGTGTTCTGTGGCATCTGTCTAACGGTGGCGGGCTACGTCTACTTCATCATCCCCGAGACCAAGAACAAGACCTTTGTGGAGATCAGCCAGATGTTCTCTTCCAAAGAACCAGTCATCCAGCCCCTGGTGCCCAGCAGCCCTGACCAGCTCAAGCTGAAGAAGATGAACAGCTATGGAACGCTAGAAAATGACTCCCTGGAGTTTGACAGCTCTGTGTCTTACCCCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08146 SLC2A9, GLUT9; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178890 lncRNA downstream 395905 19597329 ~ 19599114 (-) True G142200
TU178861 lncRNA downstream 446087 19548641 ~ 19548932 (-) True G142176
TU178747 lncRNA downstream 1157534 18835540 ~ 18837485 (-) True G142090
TU178720 lncRNA downstream 1688336 18306362 ~ 18306683 (-) True G142066
TU178718 lncRNA downstream 1690041 18304631 ~ 18304978 (-) True G142064
TU179066 lncRNA upstream 175482 20180795 ~ 20181023 (-) True G142348
TU179075 lncRNA upstream 370073 20375386 ~ 20375626 (-) True G142357
TU179126 lncRNA upstream 649750 20655063 ~ 20669631 (-) True G142404
TU179128 lncRNA upstream 654299 20659612 ~ 20743604 (-) True G142406
TU179139 lncRNA upstream 752806 20758119 ~ 20758457 (-) True G142417
AMCG00003339 mRNA downstream 65748 19910276 ~ 19929271 (-) True AMCG00003339
AMCG00003338 mRNA downstream 94787 19895311 ~ 19900232 (-) True AMCG00003338
AMCG00003334 mRNA downstream 127209 19863773 ~ 19867810 (-) True AMCG00003334
AMCG00003333 mRNA downstream 138153 19850325 ~ 19856866 (-) True AMCG00003333
AMCG00003335 mRNA downstream 147620 19829188 ~ 19847399 (-) True AMCG00003335
AMCG00003341 mRNA upstream 14545 20019858 ~ 20033589 (-) True AMCG00003341
AMCG00003344 mRNA upstream 154015 20159328 ~ 20165583 (-) True AMCG00003344
AMCG00003345 mRNA upstream 218510 20223823 ~ 20362586 (-) True AMCG00003345
AMCG00003347 mRNA upstream 596439 20601752 ~ 20604005 (-) True AMCG00003347
AMCG00003346 mRNA upstream 618090 20623403 ~ 20629596 (-) True AMCG00003346
TU179004 other downstream 118257 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 425404 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 428432 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 431741 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 440907 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000638 True 1909 mRNA 0.45 12 NC_007112.7 31573225 ~ 31598417 (+)
grasscarp (Ctenopharyngodon idella) CI01034671_00001167_00001898.mRNA True 302 mRNA 0.58 2 CI01034671 1167 ~ 1898 (+)