RNA id: AMCG00003343


Basic Information

Item Value
RNA id AMCG00003343
length 810
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00003343
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20126144 ~ 20127556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTCAAAAGAAGATGCAAAAGGTTCTTCCGTGGAAGAGAGAAGGCGAAGCCCACTGGACCATCTCCCACCGCCGGCCAATTCTAACAAACCCCTGACTCCTTTCAGCATTGAAGACATCCTCAACAAGCCTTCAGTCAGACGAAGTTACACCATCTGCGGGACAGCGCACCTGATTTCCGCCGCCGAGAAACACCCTCCGCCGGGTCTGCCCTTGTCCAGCCGGGCGCTTCTCACCCAGACCTCTCCTCTTTGCGCCCTCGAAGAGCTAGCCAGCAAAACATTCAAAGGACTGGAAGTGAGTGTCCTCCAGGCGGCCGAAGGGAGGGACGGAATGACGATTTTTGGCCAGAGGAACACTCCCAAAAAACGAAGGAAGTCCAGAACCGCGTTTACCAACCATCAGATCTATGAGCTGGAGAAAAGGTTTTTGTATCAGAAATATTTGTCTCCTGCTGACCGAGACCAAATTGCCCAGCAACTGGGGCTGACCAATGCTCAAGTCATCACCTGGTTTCAAAACCGCAGAGCCAAACTCAAGAGGGATTTGGAGGAGATGAAAGCGGACGTGGAGTCGGCCAAGGCGCTGGGTACAGTACCGCTGGAGAAAATGGCCAAACTGGCAGACCTGGAGAAAAGCGCCGCCGGGACACTGGGCAATTCCAGGTCCGATTCACCCACGCTATCCAGCCATGGACAGGAGACCCCCAACAAACTCCAAATGTCCCCCTCTTCCCCATTTACAGACCACGCTACTAGCCAGGAGTGCTCGGAAGATGAAGACGTGGAAATTGATGTCGACGactga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09353 LBX; homeobox protein LBX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178921 lncRNA upstream 469989 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 493071 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 509577 19616261 ~ 19616567 (+) True G142205
TU178883 lncRNA upstream 531877 19593878 ~ 19594267 (+) True G142194
TU178859 lncRNA upstream 584897 19541042 ~ 19541247 (+) True G142174
TU179058 lncRNA downstream 811 20128367 ~ 20128715 (+) True G142340
TU179072 lncRNA downstream 146777 20274333 ~ 20274616 (+) True G142354
TU179095 lncRNA downstream 467914 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 516925 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 617989 20745545 ~ 20749364 (+) True G142412
AMCG00003340 mRNA upstream 148229 19955769 ~ 19977915 (+) True AMCG00003340
AMCG00003331 mRNA upstream 263503 19857380 ~ 19862641 (+) True AMCG00003331
AMCG00003332 mRNA upstream 303099 19819018 ~ 19823045 (+) True AMCG00003332
AMCG00003327 mRNA upstream 385064 19728276 ~ 19741080 (+) True AMCG00003327
AMCG00003329 mRNA upstream 397923 19710196 ~ 19728221 (+) True AMCG00003329
AMCG00003349 mRNA downstream 276140 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003348 mRNA downstream 364803 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003351 mRNA downstream 632764 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003359 mRNA downstream 1024295 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003361 mRNA downstream 1398081 21525637 ~ 21748601 (+) True AMCG00003361
TU178898 other upstream 493071 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 589053 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 1433940 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 2447622 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3566938 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_01782181_01783289.mRNA True 2006 mRNA 0.41 2 CI01000049 1781736 ~ 1784055 (-)