RNA id: AMCG00003348


Basic Information

Item Value
RNA id AMCG00003348
length 3868
RNA type mRNA
GC content 0.55
exon number 34
gene id AMCG00003348
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20492359 ~ 20593500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCACAATTACCCCCCCGCTATGCCAGGGCCTAATCCAGTCAAACTCACATGGCCAGGGGAGGTGTCCCAGTCCCTGGATCTGAGTGAGAACTTCATCCAGGCCATTCCCAGGAAGGCTTTCCGTGGAGCCACTGATATCAAGAACCTTCAGCTGGACAAAAACCACATCACTTGCATTGAGGATGGGGCATTCCGGGCTTTGAGAGGGCTGGAGGTGCTCCGTCTTCACTCCAACAACCTGAACTGTGACTGCCACCTGTCCTGGCTGTCTCAGTGGCTGCGTCAGAGGCCCACAATTGGGCTGTTCACTCAGTGCAGCGCCCCCGTCCAGCTCAAAGGGCTCAATGTTGCTGAAATCCAAAAACATGAGTTCAGCTGCTCAGGTCATGTGGAGGCTGCGGTGCTGCAGCCCTGTAGCCTCGCTGCCGGCTCCTGCCCAGCTATGTGTACCTGCAGCAACAACATTGTGGACTGCCGTGGTAAAGGCCTCATTGCCATCCCCGCCAACCTGCCTGACAGCATGGCTGAAATACGCTTGGAGCAGAATGGGATCAAGTCTGTCCCTCCTGGAGCCTTCTCCCCATACAAGAAACTCCGGAGAATAGACCTCAGCAACAACCAGATCTCAGAGATTGCCCCAGATGCATTTCAGGGCCTACGCTCCCTCAACTCCCTggTCCTGTATGGAAATAAAATCACTGAACTGCCCAAAGGTGTGTTTGATGGACTATACGCCCTACAGCTGTTACTGCTTAATGCCAATAAGATCCACTGTGTCCGTGCTGATGCATTCCAGGACCTGCAGAACCTGTCCCTGCTTTCCCTGTATGACAATAAGATCCAGACTCTGGCCAAGGGCACTTTCACTGCTCTGCGCGCAGTACAGACATTGCATTTGGCACAGAACCCCTTTATCTGTGACTGTAACCTGAAGTGGCTGGCAGACTACCTGCGCTCCAACCCCATTGAGACCAGTGGGGCACGCTGTGCCAGCCCACGCCGCCTTGCCAACAAGCGCATTGGTCAGATCAAGAGCAAGAAGTTCCGTTGCTCCGCTAAGGAGCAGCGCCTGAACGGGAATGAGATTTCAGTCTTGGAGGCTACTGGTGTCTTTAAAACACTCTCTCAGCTAAAGAAAATTAACCTGAGCAACAACAAGATAGCGGAGATTGAGGATGGAGCATTCGAGGGGGCCTCTTCCGTCAATGAGCTGCACCTGACTGCCAACCAGATGCTCCGAAACAATCGCATCAGTTGCATCCACAACAACAGCTTCACAGGACTGTACAATGTGCGCCTGCTGTCCCTCTATGACAACCATCTCACCACCATTACCCCAGGGGCTTTCGACACTCTGCAAACTCTATCTACTCTAAGCCACAAGATTGTGACTGGCAACCCCAGGTGCCAGCGCCCTGCCTTCCTCAAAGAGATCCCCCTCCAGGATGTGGCATTGCCTGACTTCCGTTGTGAGGAGGgTCAGGAGGAGGCTAGCTGTGTACCACGCCCCCAGTGTCCCAGCGAGTGCACCTGCTTGGAGACCGTAGTGCGCTGCAGCAACAAACATCTGCGGACTCTGCCCAGAGGCATCCCCAGGAATGTCACCGAGCTGTACCTAGATGGAAACCAATTCAGCATGGTGCCTAGAGAGCTGTCCACCTTCAAATACCTTCAGCTTGTagACTTGAGTAACAACAAGATCAGCTCCCTTACCAACTCCTCCTTTGCTAACATGAGCCAGCTAACTACATTGATCCTGAGCTACAATGCCCTGCGCTGCATACCCAGCTTGGCCTTCGGAGGACTGCGTTCCCTCAGACTGCTCTCTCTCCATGGCAATGACATCTCAGAACTGCCAGACGGCATCTTCAGCGATGTGGCCTCTCTGTCACACCTTGCAATTGGAGCCAACCCACTTTACTGTGACTGTCGTCTGCGCTGGCTGTCTGACTGGGTGAAGACTGGCTACAAGGAGCCTGGCATTGCCCGCTGCACTGGACCACTGGGCATGGAGAGCAAATTGCTGCTGACCACTCCAGCTAAGAAGTTTGAGTGCCAGGGCTCTGTAGATCCAGCAGTCCTGGCCAAGTGCAGCCCGTGTCTGTCTAGCCCCTGTCAGAATGAGGGCAGCTGTCAGACTGATCTGCTGGATGTCTTCAAATGTACCTGTGCTCCTGGATTCAAGGGGAAGAACTGTGAAACAGCCCAGAATGCTTGTGTCAGTAATCCATGTGCCAATGGGGGCACTTGCCAAGTGAACCCAGAGGACAGTGGGGGCTTCAGttGCTCCTGTGCTCAGGGTTTTGTGGGCACCACCTGTGAGCTAAATGTGGATGATTGTGAGGATAATTGCGAGAACGGAGGAACTTGCGTTGATGGAGTCAACAATTACACCTGCCTGTGCCCCCCCTTCTACACAGGAGAGCTGTGTGAGGACCTGGAGGATGTgtgTGCCTGCGCTCCTGGCTTTGTGGGCGATGACTGCAGTGTGGACTATGATGACTGTGCAGGGCACCGCTGTCAGAACAGCGCACAATGTGTTGATGAAACCAATGGctacttgtgtgtctgtgctgaagGCTTCAGCGGTCAGCTGTGTGAGGTGCCCACAGCCTCACACTCCCAGTGTGACCTAGTAGAGTGTCAGAATGGTGCCCCCTGTGTAGAGCGGGGCGGCAGGGCCCTGTGCCAGTGTCTGCCTGGCTTTGGGGGACCTCGGTGCGAAAAACTTGTCAGTGTCAACTTCGTGGACAGAGATTCCTACCTGCAGCTGAGCGACCTGAAGAACTGGCCTCAAGCAAACATCACATTGCAGgTGTCCACAGCCGAGGACAATGGAATTCTACTATATAACGGAGACAATGATCACATCGCAGTGGAGCTGTACCAGGGTCATGTCAGGGTCAGCTATGATCCCGGCAGCCAGCCCAGCAGTGCCATCTACAGcactGAGACCATTAACGATGGCCAGTTCCACACAGTAGAGCTGGTGACCTTTAACCAGATGGTGAATCTGTCCATCGACGGGGGAGTCCCGATGACTATGGACAGTTTTGGAAAGCTGCAGCCCCTGAATGGAGAGGCTCCGCTATACGTGGGGGGAATGCCAGTGGATGTCAACTCAGCCGCCTTCCGCCTCTGGCAGATCCACAATGGTTCCAGCTTCCATGGCTGCATCCAGAACCTGTACATCAACAACGAGCTGCAGGACTTCACCAAGACACAGATGAAGCCGGGCGTGGTACCGGGCTGTGAGCCCTGCCGCAAGATCTACTGTCTGCATGGCATCTGCCAGCCCGATGGAGCCACCGGGCCTGTGTGCCACTGCCAGCCAGGCTGGAGCGGCCTGCACTGCGATCAGCCAGCCAGCAACCCCTGCCAGGGCAGCAAgtgCGTCAATGGGAAGTGTGTGCCCCTGGATGCACAGTCATATCGCTGCGAGTGTCAGGAAGGATACCGTGGTGCCCTGTGCAACCAGCAGGGGGAGCTATTCAACCCTTGCAAGAGGCTACATTGTAAACACGGACGCTGCCAGATCTCAGATGCAGGAGATTCTTACTGCCACTGTGATGGCGGCTACAGTGGGGAGCTGTGTGACACAGAGTCAGAATGCCGTGGGGAGCCAGTGAGGGACTTCTATCAGGTGCAGCGCGGGTACACCATCTGCCAGAGCACGCGCCCGGTGTCCTGGGTAGAGTGCAGTGGGGCCTGTGACACAGGAGCTTGCTGCACCCGTCAGAGGATGAAGCGCCGGAGATACACATTTGAGTGCAGTGACGGCACCTCCTTCACTGAGGATGATATTCTACACAAGCCTGTGCCAGGTGCATGTGTGGGTCCTGAATTTCTAAGgCTTTTCctgatt

Function

GO: NA

KEGG:

id description
K06838 SLIT1; slit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179072 lncRNA upstream 217743 20274333 ~ 20274616 (+) True G142354
TU179058 lncRNA upstream 363644 20128367 ~ 20128715 (+) True G142340
TU178921 lncRNA upstream 836204 19654366 ~ 19656155 (+) False AMCG00003324
TU178899 lncRNA upstream 859286 19618881 ~ 19633073 (+) True AMCG00003323
TU178895 lncRNA upstream 875792 19616261 ~ 19616567 (+) True G142205
TU179095 lncRNA downstream 1970 20595470 ~ 20599545 (+) True G142376
TU179118 lncRNA downstream 50981 20644481 ~ 20644794 (+) True G142397
TU179134 lncRNA downstream 152045 20745545 ~ 20749364 (+) True G142412
TU179141 lncRNA downstream 173854 20767354 ~ 20771779 (+) True G142419
TU179142 lncRNA downstream 174524 20768024 ~ 20771779 (+) False G142419
AMCG00003349 mRNA upstream 83675 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003343 mRNA upstream 364803 20126144 ~ 20127556 (+) True AMCG00003343
AMCG00003340 mRNA upstream 514444 19955769 ~ 19977915 (+) True AMCG00003340
AMCG00003331 mRNA upstream 629718 19857380 ~ 19862641 (+) True AMCG00003331
AMCG00003332 mRNA upstream 669314 19819018 ~ 19823045 (+) True AMCG00003332
AMCG00003351 mRNA downstream 166820 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003359 mRNA downstream 558351 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003361 mRNA downstream 932137 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003363 mRNA downstream 1159846 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003370 mRNA downstream 1452813 22046313 ~ 22067314 (+) True AMCG00003370
TU178898 other upstream 859286 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 955268 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 1800155 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 2813837 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 3933153 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012340 True 6008 mRNA 0.52 37 NC_007124.7 555644 ~ 638485 (-)