RNA id: AMCG00003352


Basic Information

Item Value
RNA id AMCG00003352
length 1350
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00003352
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20942756 ~ 20945804 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCAGTCATACCCCCTTTCCTCTCTTTCCTGCATTCAATACCTCCTGGACTATAATCGCTCCTTGCAGAGTGATGCATCCAATTTCAGCCAGAGTGCTGCACCCCAGCTGCGCATTGGCGTTACACAGCGGGAGCCACCCCACGTGGCAATCCCCATGACAGTGTTCTACAGCCTGCTCTTCACCTTCGGGGTCCTGGCCAATGGGGTGAGTGTTCTCACCCTCCTGACCAACACTCGCATGGCGGTTAGTGCCATGCGCTTCTACCTGCTCAGCCTGGCGCTCTGCGACCTCCTGCAGCTGCTCACCATTCCTGTCACCCTGTACCGCTACTACTGGGAGTACTTCCCCTGGAGGCTGGGTGGCCCTGTCTGCAAGATCTACTTCATGGTGCGGCAGGTTTATTGTGCTACCACCAGCTGGACCATCCTGGCCTTTACCGCCGAGCGCTACGTGGCCATCTGCCATCCCATGAGGTCACTTTCCAGCTTGCAGAGCTCTCATCTGCTTGCTCTCCTGCCCCTGGTGTGGCTCATCTCCCTGGGCACCGCAATACCTTTTGCCCTGGTTTATGGCCAAGCCAGCGCCTGCATCCTGGACTACACCTCCGTCTCCCCAGAGGGGGCCTTCCGGCTGTCCACAGTGTGCGAGCTGACTGAGACAGAACCCTTCCCCATCTACAAGTCTGCCCTTCAAATGCGGGGAGTCCTGTGTTTCCTGGGGCCCCTGCTGGCCATCTTCACCCTCTATGTCTTGATCTTCTGTCACCTGCATCGCAATAGCCGCCAGCGGGAGGCCATGGGGCTGACCAGAACTGTGGCAGCCACCCACATCTCCTCAGCTGCCAAGGTCACTGGGAAGCTGCCATTCTGGGCGGTCGTGGTGGCTTTCTTTCTGTGCAACTTCCCTGACCTGGCCTCCTCCCTGATGCACGTGTATATCGAGATCTGGTCCCCGTCGGTGCACACTCTCTACACTGTGCTCAAGACATACCTGTCTCTGCCACTCTGGTACATCAGCAGTGCCCTGGACCCTGTTCTCTTCTGTATCTCTTCTACCACTTTTCGAGGCGCCTGCAAGAAAACGCTGGGGCCTCTGTTGTCCGTCTGCATTAAGCCATCCATAGGGCCAGGGGCTAGGAGGGTCCAGTGCTGGAGCAAGCAGAGGGCAGCCAGAGAGGGCCAGCTGAGTCGCCGCTCATCCCGGACCCTGAGCACCTCAGGAAGAGAGGCCACTTCGTGTGCCAGCCTGCGGACACAAAGCGGAGAACCCCAGTTCCTCTCCCTGCGTAGCCTTTTCCTGCAGGAGTCTACAAACAGTGGCAAGCAACAGTGGACAGCCACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179168 lncRNA downstream 127558 20814899 ~ 20815198 (-) True G142440
TU179167 lncRNA downstream 129110 20813073 ~ 20813646 (-) True G142439
TU179161 lncRNA downstream 132105 20809958 ~ 20810651 (-) True G142433
TU179148 lncRNA downstream 170961 20770723 ~ 20771795 (-) True G142421
TU179147 lncRNA downstream 175126 20767354 ~ 20767630 (-) True G142420
TU179279 lncRNA upstream 230540 21176344 ~ 21179745 (-) True G142531
TU179280 lncRNA upstream 230540 21176344 ~ 21213391 (-) False G142531
TU179287 lncRNA upstream 301739 21247543 ~ 21248434 (-) True G142533
TU179305 lncRNA upstream 505871 21451675 ~ 21459233 (-) True G142549
TU179329 lncRNA upstream 816208 21762012 ~ 21762258 (-) True G142570
AMCG00003354 mRNA downstream 30063 20907680 ~ 20912693 (-) True AMCG00003354
AMCG00003353 mRNA downstream 50186 20890751 ~ 20892570 (-) True AMCG00003353
AMCG00003350 mRNA downstream 146367 20776579 ~ 20796389 (-) True AMCG00003350
AMCG00003346 mRNA downstream 313160 20623403 ~ 20629596 (-) True AMCG00003346
AMCG00003347 mRNA downstream 338751 20601752 ~ 20604005 (-) True AMCG00003347
AMCG00003355 mRNA upstream 46681 20992485 ~ 20996275 (-) True AMCG00003355
AMCG00003356 mRNA upstream 79653 21025457 ~ 21043333 (-) True AMCG00003356
AMCG00003358 mRNA upstream 188267 21134071 ~ 21135380 (-) True AMCG00003358
AMCG00003357 mRNA upstream 197585 21143389 ~ 21146314 (-) True AMCG00003357
AMCG00003360 mRNA upstream 252788 21198592 ~ 21251895 (-) True AMCG00003360
TU179004 other downstream 1065994 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1373141 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1376169 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1379478 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1388644 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile