RNA id: AMCG00003357


Basic Information

Item Value
RNA id AMCG00003357
length 519
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00003357
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21143389 ~ 21146314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCGGCCAAGGGCGGGGGATTTCCTGTACTCAGACCATGAGGTGGAAGTGATGAAAACAGATATCCACCTGAGTAAGAGCCATGGGGCTGACGGACTGGTTCTGGGGACCCTGACAGAGGACGGTCGTGTCGACACTGAGCTCTGCATGGAACTGCTGGCTGCTTGTCGGCCCCTTCCCGTCACCTTTCACAGAGCCTTCGATATGGTGCATGACCCCATGGTTGCCCTGGAGACGCTGATCTCACTGGGTTTCGAGAGGGTGCTGACAAGTGGCTGTGATGTTTCAGCCCTGGAGGGACTGCCCCTCATCAAACGACTGGTGGAGCAGTTGGAAGTGATGAAAACAGATATCCAACTGAGCAAGAGCCATGGGGCTGACGGACTGGTTCTGGGGACCCTGACAGAGGACGGTTGTGTCGACACTGAGCTCTGCATGGAACTGCTGGGTACAACTGACCGTCTTGCAAAAccatgcagaaaaaaaatcaagccaCCCTCGGTGAATCacttatga

Function

GO:

id name namespace
GO:0055070 copper ion homeostasis biological_process
GO:0005507 copper ion binding molecular_function

KEGG:

id description
K06201 cutC; copper homeostasis protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179168 lncRNA downstream 328191 20814899 ~ 20815198 (-) True G142440
TU179167 lncRNA downstream 329743 20813073 ~ 20813646 (-) True G142439
TU179161 lncRNA downstream 332738 20809958 ~ 20810651 (-) True G142433
TU179148 lncRNA downstream 371594 20770723 ~ 20771795 (-) True G142421
TU179147 lncRNA downstream 375759 20767354 ~ 20767630 (-) True G142420
TU179279 lncRNA upstream 30030 21176344 ~ 21179745 (-) True G142531
TU179280 lncRNA upstream 30030 21176344 ~ 21213391 (-) False G142531
TU179287 lncRNA upstream 101229 21247543 ~ 21248434 (-) True G142533
TU179305 lncRNA upstream 305361 21451675 ~ 21459233 (-) True G142549
TU179329 lncRNA upstream 615698 21762012 ~ 21762258 (-) True G142570
AMCG00003358 mRNA downstream 8009 21134071 ~ 21135380 (-) True AMCG00003358
AMCG00003356 mRNA downstream 100056 21025457 ~ 21043333 (-) True AMCG00003356
AMCG00003355 mRNA downstream 147114 20992485 ~ 20996275 (-) True AMCG00003355
AMCG00003352 mRNA downstream 197585 20942756 ~ 20945804 (-) True AMCG00003352
AMCG00003354 mRNA downstream 230696 20907680 ~ 20912693 (-) True AMCG00003354
AMCG00003360 mRNA upstream 52278 21198592 ~ 21251895 (-) True AMCG00003360
AMCG00003364 mRNA upstream 378758 21525072 ~ 21725891 (-) True AMCG00003364
AMCG00003362 mRNA upstream 596975 21743289 ~ 21753048 (-) True AMCG00003362
AMCG00003368 mRNA upstream 620646 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003369 mRNA upstream 654716 21801030 ~ 21814784 (-) True AMCG00003369
TU179004 other downstream 1266627 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 1573774 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 1576802 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 1580111 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 1589277 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile