RNA id: AMCG00003359


Basic Information

Item Value
RNA id AMCG00003359
length 2429
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00003359
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21151851 ~ 21177530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTGCAATATATCGGTCACATTGAGCTGAGTTGTTATACGAGGTAAGGTTTGTAAGAGTACCATCAATTCACATTGAATTCAATGTAAACGATTGTACCTCTGTGTGATAGTTAATATTATAAAGAGATGTTGCTCCCAACTTTGCGATCCTTGGTAACGTGTGCCTGTCGGACGGCAGGCAACGGGTTACAACTGAGGAACAGTGTACAGCAGCGAGCTCCATGGAGGCAGTTTGTGGTGAAGAGGGGACACAGCTCAGTGGTGGCTGAGACTGGAGTCCCATCAGGGGCAGCCATGGGCTCTGTCCCAAATGCTGCCACCAACAGAATTGTGGGTCGTTGGCTGGTGGCCTGTAGTGGGATGGTGGTGGGAGCTGTTGTACTGGGAGGAGTCACCAGGCTGACGGAGTCTGGGCTGTCTATGGTCGACTGGCACCTGATCAAAGAAATGAAGCCGCCAAGAACCCAGGCAGAGTGGGAGGCAGAGTTTCAGAAGTACCAGCAGTTCCCAGAGTTTAAAATTTTGAACCATGACATGACCCTGCCCGAATTCAAATTCATCTGGTACATGGAGTACTCTCACCGCATGTGGGGACGACTAGTGGGGCTGGCCTACATTCTCCCCGCTGCCTACTTCTGGAGACGGGGATATCTGAACCGCACCATGAAGGGCTGTGTCCTGGGGCTCTGCGGCTTTGTCTGCTTCCAGGGTCTACTGGGCTGGTACATGGTGAAGAGTGGGCTGGAGGAGAACCCGAACTCCTTTGATGTCCCACGAGTCAGTCAGTACCGGTTGGCTGCTCATTTGGGCTCTGCACTGCTACTGTATTGCGCCAGCCTGTGGGCAGGCCTGTCACTGATGCTGAAGCCACACAAGCTGCCTGACACGCATCAGATAACCCTGCTAAGGAGGTTTGCCAGGGGCACTGGGAGCCTCGTCTTCCTCACTGCTCTCTCGGGGGCCTTTGTAGCAGGATTGGATGCAGGGCTGGTCTACAACTCCTTCCCTAAGATGGGGGAGCGCTGGATCCCTGATGACATCCTGGCTTTCTCACCTGCTGTCAAGAACTTCTTTGAGAACCCCACCACTGTCCAGTTTGATCATCGAATTCTGGGTATCGGCACAGTGGCAGCCATCACAGGGCTGTACCTGTTCTCCCGAAGGATAGCCCTACCACGAAGAACCAGGTTGGCTCTCACTTCCCTGCTGACCATGGCATACATGCAGGTGGGCCTGGGCATCTGTACCCTGCTGATGTATGTGCCCACACCCCTGGCAGCCACTCACCAGTCTGGCTCCCTGGCACTGCTCACCCTAGCCATTTGGCTACTCACTGAGCTCCGCAGAGTCGCTAAGTGAACCGAGGAGGTGCCCACAGCAGAAACTACAGGTTTCTCTCACTAATGCTCTCTGTCCAACACTGATGCCAACAGATAAGTAAGGAACCTCTAGTCTACAGCTTCTTGTCACCATCACCTTGACTAACTAATGCAATCTCCTTCACTCCATTCAATCTTGGTCCTAGAGAGCCCCAGTCTTTTCAAAAAAGGTCAATCTAATAAGCATGAGGAAAAACATTCCCATAGTAACAACCATTTAGATTTTAACCATTTAGCAATCCAGTTACTTGTTCAGTCAAGGGAACTCTGGTCCTTGATGGCTGAAGGATTTTCCTCTTAAATTTCAGATTTTCCCCAAATACTGTCTGCTGTGCGAGTTATAAAATCACTTTGTATTAAGGTCTATTACAGttaaaatgtggtttatttGCAGCCTGGAGAGAGTATTAATTGGATCTAGTAAATCACCTAATTAGACCAATTCATTAACTTAGAGCTAGGTTGAGTCAGAATCCAGAAGACACTGCATTCTTTCAGAAGTTAATTTGAATCATTAGAccgaaaatatatttttcagtttttacatgAGGTGCAAAGCAAAGTGCAATGCCCCTGAAGCAAATGCCTTTTCCTTGCTGAACAGTTCTGAGTAGCTGATTAACCTTAACCCCAAACAGCTGCTCAAAACTATTTTGTTCTGTCAACCAACcaatcatttttgcattattgtGGACTTCATATGACTATATCCAAGTGCACTTAACATGATAATCAGAGTTTCCCTAGCAGTAATACACAAGGCCCTGTAAAATGTCAATGACCTAGTGATCAAAACCTAAAGCAGTGAATTCCAATGAAGTGGAGTATGAAAGCATAATTATTTGGTAAACTGTGCACTACCAGCTTATTAGAAATATCCTATTAGGATAGGATAGTTAAGATATTGCCTCATAATGctgaccaaaaaaaataatggacaaaaaaaGAATCTATtccatggggggaaaaaagtatatgtgtgtgtgtgtgtgtatgtatacactcacctgaaggattattaggaacacctgttcaatttctcattaat

Function

GO: NA

KEGG:

id description
K02259 COX15, ctaA; heme a synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179214 lncRNA upstream 8720 21103820 ~ 21143131 (+) True G142482
TU179141 lncRNA upstream 380072 20767354 ~ 20771779 (+) True G142419
TU179142 lncRNA upstream 380072 20768024 ~ 20771779 (+) False G142419
TU179134 lncRNA upstream 402487 20745545 ~ 20749364 (+) True G142412
TU179118 lncRNA upstream 507057 20644481 ~ 20644794 (+) True G142397
TU179313 lncRNA downstream 396584 21574114 ~ 21659778 (+) True G142556
TU179331 lncRNA downstream 588811 21766341 ~ 21766544 (+) True G142572
TU179340 lncRNA downstream 623489 21801019 ~ 21806660 (+) True G142580
TU179384 lncRNA downstream 813982 21991512 ~ 21994674 (+) False G142620
TU179383 lncRNA downstream 814884 21992414 ~ 21994674 (+) True G142620
AMCG00003351 mRNA upstream 387166 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003348 mRNA upstream 558351 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003349 mRNA upstream 743167 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003343 mRNA upstream 1024295 20126144 ~ 20127556 (+) True AMCG00003343
AMCG00003340 mRNA upstream 1173936 19955769 ~ 19977915 (+) True AMCG00003340
AMCG00003361 mRNA downstream 348107 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003363 mRNA downstream 575816 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003370 mRNA downstream 868783 22046313 ~ 22067314 (+) True AMCG00003370
AMCG00003371 mRNA downstream 957371 22134901 ~ 22144437 (+) True AMCG00003371
AMCG00003372 mRNA downstream 1146302 22323832 ~ 22487911 (+) True AMCG00003372
TU178898 other upstream 1518778 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 1614760 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 2459647 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 3473329 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 4592645 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile