RNA id: AMCG00003362


Basic Information

Item Value
RNA id AMCG00003362
length 555
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00003362
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21743289 ~ 21753048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTAGCGCTAAGATTTGCGTATTTCCGTCCTCAAAAGATGATGTACAGGAAAGAGCTTGTctACCCAGCCATGGCCCAGGTGGAGAAGAAGTCAGGCTTGTTGCGGAAGTCCTCTGCCTCTCGGAAGCCCCTGAAGGAGAAGGTGGTCTTGATGTACGATGGGATCTTCGCGAGGGAGGATCCAGCCAAGAATAACCCACGCTTCTGGGAAGAGCTTTTCCTAATGAAGGTGAACCTGGAGTACCTAGAGGGGAAACTGGAGTCTCTGGATGGAGATGAGCTGATGAAAATCAAGGACAACATTAACAGCCTATTCCAGCACTGCATCCAGGCACTAGGCGAGGAGCACCAGATCAAAGTAGTCAATGCTTTACAGACACTGTGTGCTCTGTTTCGGGGAGTTCACCAGAAGAACAAATCGACATCGGGTTTTGACATCATCAATATGCTAATGGGCTTTGACAAGGCAGAACTGCGAATGAAGGTGAGGCCCAGGGAAAGGGGGAGGAGTCAGCAGAGGGGATGGAAATTAGGAGACAGGAttgatagatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179305 lncRNA downstream 284056 21451675 ~ 21459233 (-) True G142549
TU179287 lncRNA downstream 494855 21247543 ~ 21248434 (-) True G142533
TU179280 lncRNA downstream 529898 21176344 ~ 21213391 (-) False G142531
TU179279 lncRNA downstream 563544 21176344 ~ 21179745 (-) True G142531
TU179168 lncRNA downstream 928091 20814899 ~ 20815198 (-) True G142440
TU179329 lncRNA upstream 8964 21762012 ~ 21762258 (-) True G142570
TU179460 lncRNA upstream 313905 22066953 ~ 22069982 (-) True G142661
TU179463 lncRNA upstream 331870 22084918 ~ 22085191 (-) True G142663
TU179466 lncRNA upstream 338653 22091701 ~ 22094628 (-) True G142665
TU179515 lncRNA upstream 949534 22702582 ~ 22706511 (-) True G142709
AMCG00003364 mRNA downstream 17398 21525072 ~ 21725891 (-) True AMCG00003364
AMCG00003360 mRNA downstream 491394 21198592 ~ 21251895 (-) True AMCG00003360
AMCG00003357 mRNA downstream 596975 21143389 ~ 21146314 (-) True AMCG00003357
AMCG00003358 mRNA downstream 607909 21134071 ~ 21135380 (-) True AMCG00003358
AMCG00003356 mRNA downstream 699956 21025457 ~ 21043333 (-) True AMCG00003356
AMCG00003368 mRNA upstream 13912 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003369 mRNA upstream 47982 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003366 mRNA upstream 65138 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003365 mRNA upstream 215657 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003367 mRNA upstream 241196 21994244 ~ 22020014 (-) True AMCG00003367
TU179004 other downstream 1866527 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 2173674 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 2176702 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 2180011 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 2189177 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile