RNA id: AMCG00003363


Basic Information

Item Value
RNA id AMCG00003363
length 2589
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00003363
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21753346 ~ 21755934 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACGACTCGCCTCGTTAGAGCAGGTAACAGATTTTGGTGATTTTACTAGAGGCAGCGATTTAACCGACTTTTTAAAACAgagttatattaataattgtagtAAGAACGTTTTACATAATGTCCGGGTTAGTCCGGACGGCCAGCACATCCACGCTATCCTCCACAAACCAAATAGCGTTGTGTTGACATTTGACAAACTGCAAAGGACTCCGCTTGTGCCAAGTCACAATAAGCACATAGAGCTGAATTGGACCAGGACGGTGCCCATTGTGGATCTAGTCTATTTAGAGTCCAGACAAAAAGAAGGCGGCTCGGTGGATCTGGTTCTTGTTCTTGAGAATGGGAAAGTCGAGTTCTGGAAATACTGGGAGGGGAAAGGTAGCTGGCAGTTGCAGGTAACGTCGGAGCTGTGTAACAGTCCCAGGGCTAAAGTCGTCTCCGTGTGTACCAGTAGCAAATGCATCATCTGGTGTGAGGAGAGACCCCCTTCGGAAAGCGCCTCCGTCTGCACCGCCGCCCGCAACACCTTCAGGTACTGCATCTGCACCCGGAGTTACGAGCTGGAGGAGCGGGGTGTCTCCTTAGGTGGGGTGAAAATCATTTTGCACAATAATCCCCGATACACGGTGATCTCCTCGGGGGGGAATGTTTACCTGCTGCCGGATAAGGAGACCCAACCCGCCAGCCTCTCAAAATTCTTCCTGATGTGCTCCCCGCCGACGATGGACACTATCACAGTCTGCAATGCTTGTAAGGGGACGTTCCTGAAAAAAGAGTCGCGGCAAGGAAAGGAATCTGACTTCAAAAGACTCATTTCGGACTGTATTGGTGTTCTGTCCACTAGCAGCCCCCCGGAAATCTGTTCCGTCTTCCCTACAGGATGTGGGGGTCTGCTACTGCTTCTGAGCTCGGGCTGGATCAGCATCCTGGGGGCGGACGGTGTTCTGCGCCAGGTCTACAAACTGGCAGACAATTGCTTAACCGACCgcagcacacacagcagcatGCAGGTCTACGGTGAGCTGCTAGCTTTTGCCGTGGAAAGGACTCTTTACTTGATCGACACTAGGTGCGGCGCCGAACTGGAAAAGATCCCGTTGAATAAAGAAGGGCTGCTCTTCGTGAACTGCAGGGCGAGACATCTGCCTCACATGCTCACGGATGCCGGGATCTTTGTAAGCAGGCTCAGGGGACTGGACCGCAGCCCAAAGCCCCTGTGCCACACGGAGAGCATCAGGCCTGACTCCCTCTTGGTGGAGGCAGTGTTCGAAGAAGCCTGTAAATACTACCAGCGCCGCAGTTTGAGCAGCACACAGCTGACTGTGGAGAAACTGAAAAGTGGGGGCATGTTCCAGGCTCCCATCGCTCTGTCCTCCATCCTTGGCGGCTACCTGAGGGGCCACAAGCCGACCGGTGATCTGGTGCAGGGGGAAGACCCCATCAGCTATGCCAAGTTGTTCACCTCTCTGGAGCCGGAGCTCAAAAGCCTGATAGCCCTGGAGGAAGTGAAGACTGCAGTGGTCAGGGCTTCTGAGAAAGAGCTGTCGGGCTACAGCGAGGCCCTGGTGAGTGAGGAGGTTTCCCGTCTGCTGAGCACTGACTTGGACAGGGAGAACCTGCAGTACCTCAACATGGTCTTCAACACCTTTCCACTGGAGTCTTGGCAAGCTCTGCAGGCTGGGCTGCAGCTGGGGCCCAATGGGGAGGGCTCCCTTTTGGCCAAGACTGGCACTGAGGTGTGGAAGTCAATTTTGAGCCCCTTGCCAGCTGCCCACCCCTCCCTCACCAATAGCCAAAAGGGGGGCACCCCTGCCAATAacaaccacagcagcagcaatggGGCGGTGCCAGTTTTTGAACTGATCTGCCGCTCACTCCTCACCTTCCAACCCCAGTGGTTGCCCAGGTTTGTGGAACTGGcccaacagcagcaacaacaagcAGGCGCATCATCGTGGAGTTACGGGGTGAAGGAGGGACCAGAAAGCGTGCCCCTGTACAAGCGGGCCTTGTCTGTGCTGCCTGAGAGAAGTGAGTCCCAGGATCTGGAGGTGGAGCTGCTGCTGTGCAGCCAGAGACCCAACGCTGTCATGCAGGCCTTGCGGACCCTAATAGAGCAACGGCAGTGGGGACGGGTCACACAGGTGGCAGAGAGCTTCTGCCGACAGAGCCCACTACTGAACAAGGAGATCTTCACCTCCCTCCTGTGTGAGGTCTCCCAGCACAGGGATCTGGACCCTTACCTGGATCTGCTGTGGACCCTGTGTCCTGAGGACTTCACAGTGACCAGCATCCTCAATATTGTCCTGAAGAAcctgcctctctcctccccaGAGCCAAGCCCCTTCCAGACTGAAGGCAGCCAGCTGACCATTGGCACTCTGAAGCCACTGCTGAGCAAAGTGTTGCAGAGGGAGACCAAACCTAGCCAGAGGTATGCAGACATCCTCCAGTCACCCTTccctccccccacacccccccggCAGATCAAGGGACTGCCCTCGTCTGTGTCCGAGCCTGCTATTAATCAGTCCAAACAGAGGACACCCTCTCCCACCAAAATCCCAACTACAACCAACTCCTGA

Function

GO: NA

KEGG:

id description
K20192 HPS6; Hermansky-Pudlak syndrome 6 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179313 lncRNA upstream 93568 21574114 ~ 21659778 (+) True G142556
TU179214 lncRNA upstream 610215 21103820 ~ 21143131 (+) True G142482
TU179141 lncRNA upstream 981567 20767354 ~ 20771779 (+) True G142419
TU179142 lncRNA upstream 981567 20768024 ~ 20771779 (+) False G142419
TU179134 lncRNA upstream 1003982 20745545 ~ 20749364 (+) True G142412
TU179331 lncRNA downstream 10407 21766341 ~ 21766544 (+) True G142572
TU179340 lncRNA downstream 45085 21801019 ~ 21806660 (+) True G142580
TU179384 lncRNA downstream 235578 21991512 ~ 21994674 (+) False G142620
TU179383 lncRNA downstream 236480 21992414 ~ 21994674 (+) True G142620
TU179464 lncRNA downstream 335767 22091701 ~ 22094748 (+) True G142664
AMCG00003361 mRNA upstream 4745 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003359 mRNA upstream 575816 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003351 mRNA upstream 988661 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003348 mRNA upstream 1159846 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003349 mRNA upstream 1344662 20403696 ~ 20408684 (+) True AMCG00003349
AMCG00003370 mRNA downstream 290379 22046313 ~ 22067314 (+) True AMCG00003370
AMCG00003371 mRNA downstream 378967 22134901 ~ 22144437 (+) True AMCG00003371
AMCG00003372 mRNA downstream 567898 22323832 ~ 22487911 (+) True AMCG00003372
AMCG00003374 mRNA downstream 955958 22711892 ~ 22716708 (+) True AMCG00003374
TU178898 other upstream 2120273 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 2216255 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 3061142 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 4074824 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 5194140 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile