RNA id: AMCG00003366


Basic Information

Item Value
RNA id AMCG00003366
length 6321
RNA type mRNA
GC content 0.44
exon number 21
gene id AMCG00003366
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21818186 ~ 21866585 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGAGAATCAGACTGTTGACGTGCTCAAGCCCAGCTCCTCCATTACTATGAACGCAGAAGGTGAGGTCACTATTTCCCAGACTGTTGTAAATGGACTGTCATCACTGCCACCCTTGCACGAGCAAGAGAGAGCCGTTGAAGTCCCTTTGCGTGCACGCGCTATCTCTGCTGTTAAAATAATCCCAGTGAAGAAGGTGAAAAGCTCCCCTGACCTAATGCGGGTGACAGCTCGCTGCGGAAAACAAACAGGTCCTGAGCCAACAGACCCAGGAACAGATGGTTGGAAAACACAGTCCCTTGCTGACACTAATGGAGACGGCACAGGCACTTCATTGGCTGCTAAAGGCTATCGCAGTGTCAGACCCAATCTGCCTTCAGACTACAACACACAGTCACAGGATGGTTCTCCTTTCCTTGTTCTACCTGACGTCCATGTAATACCTCTGGAGCAGTCTGAGCGTGCTGTGCGACCTCAGAGCAGCCCATGTCCCCCACTTGTCCCTGCCGGCCAGGAAACCACTGTCTCTGAACCAACTGGACCACTCACCTTGCCGACAATCGATGATTTTATACCTCCTCACCTGCAGAGGGGAATGTCCCGTGTCGCACCCACCACCATCGAATCCCCTTCCCTGACTAACCCTCCACCTTCACCTCCAGCACTACCACCATCACCGTCCCCAACTTCCCACCCTATACAGGCACCTGAGCCTGCCACCTCCTCTGCCGTCTGCTCCGGAGCACCTACAGTGGTGCAGCCTGTGAGTACTGAGGACTCTACACTTGCCTCCCACTCCGATCCACACTGCTTTTTTCCATCAACAGGCAAGCCCTCCTCTGCCTATCCCTCCACTACAATTGTCAACCCAACTATAGTGCTTTTACAGCACAACCGAGAACAGCAAAAGCGCCTTCATAGTTTGGCAGATCCTGTGCCACTGAGGCCGAGTGGTCCCAAGGAGGGGAGTACAGGTACACAGGAGAGAGAGCTTGCCGAATACCCCAAAAGCGAAAACTCTGAAATGGACAGCAGAAGGATGAAGCTCGTCAGGTCTCCACAAAACACTGGCATTGGCCCTGTGGATGAAATTGGCATTCCTCTGCGGAATACAGACAAGTCCAAGGATTGGTATAAAACCATGTTTAAGCAGATCCACAAAATCAAAGAATCTCCTGAAGAAAACCCTTACTATCCTACCTACAAATTCCCTGAGTCTTCCGAAAAGCCCATCAAAGTAGAAGAGGAAAATCCTTATGCCCCCACCTACCAGTTTCCAGAGTCAACACCTAGTTCAAATTCTGAAGTGGAGACCCCTTACATCCCAACCTATGTTTTCTCAGAAGTTGCTAAAAGCCACTGTTCTGAAGATGATGATTCTGATTCATATTCCCCAAGACAGTCGTATTCAGATGACATGAAAAGTCAGCCTGCTGTGCCTCGATCAAAAAGTGCAGGGGACAATATTGACACTGAGGTGGGAGTGAAGAGGTCAGCCACAGTGCCCCTACCAATTCGCTCCTCTTCTCTCAAACCTTCCTCTGAAAGGAACAACTGGGAGCCCCCAGATAAGAAGGTTGACACCAGGAAATACCGTGCTGAGCCCAAGAGCATCTTCGAGTATGAACCAGGAAAATCCTCTGTGCTGAAGCAGGAGAAAACGACTCGGGATATAAGCCCAGAAGAAATAGATTTAGAGAATGAACCTTGGTATAAATTCTTTTCAGAGATGGAGTTCGGAAAACCGCCTCCAAAAAAGATCTGGGACTATACTCCAGGGGATTGCTCTATTCTTTCTCTGGAGGATAGGAAGGACCAGCTAGAGAAAGATCTCTACCGTTACCAAGCAGAGTTAGAGGCAGATATAGAAAACATGGAGAAGCTTTACAAAGCACAAGATAAAAGACTGTGGAAGAGTGCCCACTTCAATCCCCTGGAAACTCCTGCCGATCTTCAGCAGTACTCAATGTATACGCCCAGTTACCATGATGTGAGTAAAGAGAGTGATGCGGTGGTCAGCGAGCCTGGAGGCTCCGAGTGCGAGCGGCTCATTTACAAGAGTGTCCTGGAGGGCGGTGATATCCCACTACAGGGGCTGAGTGGTTTGAAGCGTCCCTCCAGCTCTTCTTCCACAAAAGGTAGGCATTGACTGACAGAGGAATGTACTAATTGACATTGCTGTCCATAACAAtaccacaattaaaaaatactacatGATGCTGATTCACAATCTCACAATAAACCTTCCTGAATTCATGATGCCATGatgttagttttatttatatatataaatatatatctgctTTTTTATGCTCGGTAAATTCCTAATTCAATTCTTCATATATCATATGAATACTGACTGAATACCCCATTATTGTAAACTGTTATCTATTGTTTGTTAATGGAAAATGTTGTAACAGTGAATTGTCACTACAACAATGAGTTATACCATTGTAATGGAACAGAAAACAGTTacaactgaaattaaaccaCCCCTAGAATTAGTCATTCTTGTGTGTGCAGACAGTGAGATAATGTCATTATGTAACCTTATTGGGGCTGCTATGATTAACTACATGCGCATAGACCTGACAGCACAGGAATTATTGTAGAAAAAGCTTAGATATAGGGGCAGACATGACATAATGCATGACTGAAAAGTAcaactgttttaatttgatagTTTAACATTTTTCGTCTGGACTTTTTTCATATAGACTCCTATAAGATTATGTTGAGTTACaaagtaggcctatattatATTAGATTCAGTATGATaccatttatttaatagaaaaatgtgGCACCAGTACAGgtaaaatcaaaaatatatatagaaaaaagtatttaataggTATTGATTGTGAATTAATTGTTATGCTTGGAAACCAGTGAGTTCCAGTttgtaaataagaaaatactgaGACTTATCCTTTATTGTTTTGTCAATATAAAATCTTGCATGCTGTTGAGATGGTAATGGAACCTGTATTTGAACAACCACATATCTCTTCTAGAGTTATTCACTTTCAgaaactgttgtgtttttacaggTTAACaataatttttttctatttattttttcatttttcagattaaaaaaaaaatgcctagAAGTgcataatttataatgtataaaaaagaGCTGTTAGAACCCcttagaaaaatattaaatgagaTCAGGTATTTTGAGTCTGTGGTTATAGGAGTGattatctattaaaaaaatgacagtcCTTGTTGGAGAAGGCAGCATCATGTATTGAGTTCATTTCACATGCTTCATGGTATCATTTGTCTTCACAACCAAACATGACTACCGTCATTTCTCATCGTTAGTGCTTTGTGTTATTAGATGTGAAATGTGCAGCCAGTGTCTAGTGTTCCTGTTTTCACATCTGCCAAGCTTGGCATGCACTTTAATTCAATGTCCTTTTGATGTTGTGTTAAAGCTGCCAAGCATTAGTTATATACTTGAATTTTCTCTGCTTTGGAAGAGGAGAGGCTGTTATTACTGTTTGATAGAGACTGactgaaacaaaatgataaGATTTTCAATTATGGAGTGAGaaaacagctgtttaaaatccagtgggttttttttaatatattttgaggAGTTTCCATCTCATCTATGGcaatttaaatgtgaatgtcctgtgttttactgcattttgtgtgtgaaactAAAAACTCAGTCACTGTAAGCACAGCTTGTGTTAGGTGTACTGGTCAGCCACACACAGATGTCAAGGTCAATCTGAGAGTCAAGAATGTGGTCATGCAGCATGCATCAAACTGTGATCAATGCCAATTTATATTTCACCTAATAgactttatttattctgttgttCTGCATGCTTACCAGTGGATCATAAAGGTGGGAATGCTTACATCATTTCACCTTCTTCTTCAGTAAATAGATCAGTTGTTGCTAGTAATATGCTAGGTAATAAATGTAAGCATAAGAAGCCATTGTCAGCCGCCAAAGCCTGCATTTCCGAAATCCTCCCTTCCAAATTCAAGCCCAAGCTGCTGTCTTCTGGCAGTGGATGCCAAGAGAGGGAAGTACCCACTGCAACACATCCAAAAGCTCATAGCTGTGAAGACCTGCATGATGGCAGCTGCTACTTTGATAGCAGGAGGGCAGTGCCTAGCCAGGTGGGCCACAGTTCAGACTCCCTGATACTGAAGGAGGGAGGTCACATGGGGAGGCGGGCAGGCAGTGCAGCCAGCCTTCAGGAGTACAGCTCCCAGAAGAGCACCAGCCCTCCACGGAAGAGCACAGCAGAATTTGCGACCATGTACAAAAACATGCACCACATCCGACGCCCTGGGTCACAAGGCCAAAGCCCTGGGGGCAGCGTGAGGAACCTGGCCTCTCAGTTTGAGAGAGAGCACGGGGGTCTTGGAGGGCATGGTGAGGGGGATGAATCTGAGCGTGTCCCCCGTCACACTGTGTCCTCCCGGGTGTCAGAGTTCGAGCAGATCATTCAGCGCTCCTGCAGCATGCCAGCGCTAGACAGTGCCCACAACACCCAGAGCCCTAGCCAGTCTCGTATGGCCTCTGCTTTCTCAGCCGAGTCTTTGCTCATTGAGCCCCcaaagagggaggaggaagaggaggagagggaggtgaAAATAATAGTGAAGGGAGCCTCTCTGTCAGAAAGCGAAGTGGCAGAAGAGCTGGTTTCCTCTGAATTCAGTGACATGGCACAGGTGGACTCACTCTCCACCGGCACGGAGACTGAGATCGACCGCCTCTCCAATGCCTCAGCAGAGAGTTCTGCCAGCAGCAGCACTTTACCCTACCACCACCACAGACCCAGCAAGTGCAAAGGAGCCTGCCCTGCCTCCTACACCCGGTTCACCACCATCCGGCGGCATGAGCAGCAGCAGGCCAAAGCCCAGGCTAAGCTAGCcatacaagaaaacaagaatgTCTTCCCCAGGAATCTGTTTCTAATGGGCCCCATGCCCTTCCGGTTGAAAAAGCCACTCCAGCAGCAGGAGGTGAAAAAGACCACAGCCTTGTCAGTAACAAGGATAACAACAAACAGCCCCAAATTAGGTCAGGTTGATAATGGTACCCTGCTGGGTATATCACCAGAAGAGAAACCATTCATTCCACAGAGACAGTCCTCCCTGGAAGCAGTAGAGAGACTCAGCACTGGGGAGACACGCGAGGGTACACTCTCTTCCCCCAATGGGTGCTATGATGGCGTCACTAATGGCAACAGTGTTCCGTTTGCTCTGGATGGCTTGGACCCAAACAACAATCCGCAACAGCTGATGATGGGAACGTACCTCAGAGGTGGCTATTCATGTACTTTGCAAGTGTCACTCCCATCTGTGTGGCCGCTCATTTTTTTGACCTGTCTCCACTTCTTCTCTGTTCTCTCACAGTGATATTGCAATCTTCATTCCAGCCtgtctgttgtttttacaacctgttttgagtgacatcTTATCATGAACCTGTTTTTTCCAATGTTGTTCGCTGGCTGTATAGGCATTGTCCAAATGAACACCATAAGAATACATGACGAAACATTGTAGTGGTTGAAGGGTGTGGTGCGAGAGGTTTAACTGCAAACTTTGGTCATGTATTTGTCTATAcatactgtgtgtatatgtgtctaTACATTCTTTGTGTaagtgtgtctatatatatatatatatatatagacacacacacataaaagtTGTGTGACATAGAAAATAACTTTTTCCTCTTCTATTTTCTGTGGCATGGAACTTGCCCTATCTCATATTAAGGCCATTTCAAATAAAGTACCTCAGATTATGCAGAAATGGGTGCTTATTCATATGACATTTGCCTGACCATAgactgatttctttattttgtttctgttacacATGGAGTTTTACCTTTCGTAATCTTGACCTTCATATCAGTGCTTAAAACCATTTTGTGTTTATACTGCAAAATCACATTATTCTTATGCTTATTATGCATCATTTGTAGCTCAAACTATTTTCCTGTTGTTACTTGGGAAAGCATCATATGGGAGATGAATTTTAATAAGAAGCACTCAATGTAATGCCTGCTGGTAGTGTCTTGTTTACAAAGGGAAATCCTGAAACCCATTTTAATTAGGGGTTGGATATAGAATGGTCAATTGGGAAAGGTGAGGATGCTTTTtgtaatgtgtatgtttgttagTTGTGCAAAATACCAATCCTGTTTGTCTCTTAAGTAGATTCTGATTCTCCTCACCATTTTGCTCCTGTGGAGTATTCAGAAACCCCAGAGGACTTTGTACGCAGACGCTATGATGACAAAGaggtaacattt

Function

GO: NA

KEGG:

id description
K06086 SORBS1, SH3D5, PONSIN, CAP; sorbin and SH3 domain containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179329 lncRNA downstream 55928 21762012 ~ 21762258 (-) True G142570
TU179305 lncRNA downstream 358953 21451675 ~ 21459233 (-) True G142549
TU179287 lncRNA downstream 569752 21247543 ~ 21248434 (-) True G142533
TU179280 lncRNA downstream 604795 21176344 ~ 21213391 (-) False G142531
TU179279 lncRNA downstream 638441 21176344 ~ 21179745 (-) True G142531
TU179460 lncRNA upstream 200368 22066953 ~ 22069982 (-) True G142661
TU179463 lncRNA upstream 218333 22084918 ~ 22085191 (-) True G142663
TU179466 lncRNA upstream 225116 22091701 ~ 22094628 (-) True G142665
TU179515 lncRNA upstream 835997 22702582 ~ 22706511 (-) True G142709
TU179532 lncRNA upstream 961487 22828072 ~ 22828460 (-) True G142725
AMCG00003369 mRNA downstream 3402 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003368 mRNA downstream 42738 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003362 mRNA downstream 65138 21743289 ~ 21753048 (-) True AMCG00003362
AMCG00003364 mRNA downstream 92295 21525072 ~ 21725891 (-) True AMCG00003364
AMCG00003360 mRNA downstream 566291 21198592 ~ 21251895 (-) True AMCG00003360
AMCG00003365 mRNA upstream 102120 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003367 mRNA upstream 127659 21994244 ~ 22020014 (-) True AMCG00003367
AMCG00003373 mRNA upstream 237542 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003375 mRNA upstream 965604 22832189 ~ 22833510 (-) True AMCG00003375
AMCG00003377 mRNA upstream 1113915 22980500 ~ 22985638 (-) True AMCG00003377
TU179004 other downstream 1941424 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 2248571 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 2251599 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 2254908 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 2264074 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU75345 True 2053 lncRNA 0.39 2 NC_048565.1 61937520 ~ 61939608 (+)