RNA id: AMCG00003367


Basic Information

Item Value
RNA id AMCG00003367
length 954
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00003367
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21994244 ~ 22020014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCCTTTCCACCCACTCACCGGCTGACGGCTGAAGAAGTGTTTGATGCCAATGGCAAGCCACGGGCGGAGATTCTGAAGAACCACCTTATTAAGGAGGGACGCATGGAAGAAGAAATTGCACTTCGAATTATTAATGAAGGGGCTGAAATCCTGCGCCGTGAGAAAACTATGATAGAAGTGCAAGCCCCTATCACAGTGTGTGGTGATATTCACGGGCAGTTCTTTGACTTGATGAAGCTATTTGAAGTGGGAGGATCCCCAGCCAACACTAGATATCTCTTCCTTGGTGACTATGTAGACAGAGGCTACTTCAGTATAGAGtGTGTTCTGTATTTGTGGGTGCTGAAAATTCTATACCCATCCACACTGTTCCTTTTAAGAGGCAATCATGAATGCAGACACCTCACAGAGTATTTCACATTCAAACAGGAATGTAAAATCAAGTATTCTGAACGAGTGTACGATGCCTGCATGGATGCCTTTGATTGTCTACCACTTGCTGCACTTTTAAACCAACAGTTTCTATGTGTCCACGGTGGCCTTTCACCAGAAATTCAAACTTTAGATGATATTAGAAGAtTAGATAGATTCAAAGAGCCACCTGCGTTTGGGCCAATGTGTGACCTGTTGTGGTCAGATCCTTCAGAGGACTTTGGAAACGAGAAGTCACAAGAACACTTTAGCCATAACACAGTAAAGCTGCAGCCCGAAAAGAGATCATCAGAAATAAGATCCGAGCAATTGGCAAAATGGCCCGAGTCTTCTCTGTGCTCAGcGATCCGAGGATTCTCGCCACAACATAAAATCTGCAGTTTTGAAGAGGCGAAAGGCTTAGACAGAATCAACGAGAGAATGCCTCCACGGAGAGACACCCTACAGCAAGATGGTATTCATACGATAAGCCCTACCAATGCCATTGAAAACAATGGAACTGGCAACAACAATGCTCAG

Function

GO:

id name namespace
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179329 lncRNA downstream 231986 21762012 ~ 21762258 (-) True G142570
TU179305 lncRNA downstream 535011 21451675 ~ 21459233 (-) True G142549
TU179287 lncRNA downstream 745810 21247543 ~ 21248434 (-) True G142533
TU179280 lncRNA downstream 780853 21176344 ~ 21213391 (-) False G142531
TU179279 lncRNA downstream 814499 21176344 ~ 21179745 (-) True G142531
TU179460 lncRNA upstream 46939 22066953 ~ 22069982 (-) True G142661
TU179463 lncRNA upstream 64904 22084918 ~ 22085191 (-) True G142663
TU179466 lncRNA upstream 71687 22091701 ~ 22094628 (-) True G142665
TU179515 lncRNA upstream 682568 22702582 ~ 22706511 (-) True G142709
TU179532 lncRNA upstream 808058 22828072 ~ 22828460 (-) True G142725
AMCG00003365 mRNA downstream 3824 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003366 mRNA downstream 127659 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003369 mRNA downstream 179460 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003368 mRNA downstream 218796 21766960 ~ 21775448 (-) True AMCG00003368
AMCG00003362 mRNA downstream 241196 21743289 ~ 21753048 (-) True AMCG00003362
AMCG00003373 mRNA upstream 84113 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003375 mRNA upstream 812175 22832189 ~ 22833510 (-) True AMCG00003375
AMCG00003377 mRNA upstream 960486 22980500 ~ 22985638 (-) True AMCG00003377
AMCG00003376 mRNA upstream 965658 22985672 ~ 22986067 (-) True AMCG00003376
TU179004 other downstream 2117482 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 2424629 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 2427657 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 2430966 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 2440132 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile