RNA id: AMCG00003370


Basic Information

Item Value
RNA id AMCG00003370
length 2232
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00003370
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22046313 ~ 22067314 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAGGGAAAGGGTAGACTGAAATTTGATGATCTTGAAACAGGAGGTTGTGACAGTGTGACTGACAGCGAAGCAGAGTTGGAGGTGATTCATGCCAGCAGCCAAGTGGTAGTCGAGGTCCCAGCGGAAGATCCACAGCCAACTCCTGAGGACTGTGTTGTTGAAAAGCAGGAGCCTTGTAACACACCTGCTATATCCTCTTATGAGAACTGCATTACCATTCAGCCAGACCGAATACGATGTGGGgcaGAGGTGAAAGTTTACATCATACTGAAATGTAAACTAGACAGTCAGGTAAAAACTGAATTGGAATTTTCATGCAAAGAATGTCCCCCCAAAATAGAACCAGGGGTACTTGAGAATGAATTTACCGTCTCTGCCAAGGCACCTGTCTGCTCAGTGCCTGTAACTTACATCACTGGCATGGAGGACATCAGAAACTACCTTGAAAATGCCACCAACCCAATAGAGTTCATGTGTCAGGCTTTTAAAATCACCACAAACAGTATAGAGTCATTGGACCGCTTATTGACGGAGTCACTGAAGAATAATATGCCTACAACTGGTCTTCATCTCTTTGGAATCAACCAAATTGAACAAGAAAATATGTCAGCATACCAAAGAGAAGAGGAGTTGCCAACACTGCTTCACTTTGCTGCTAAGTATGGACTAAAGAAACTAACAACCAGCCTGTTGCAGTGTCCTGGTGCCTTGCAGGCCTACAGCGTGGCTAACAAATATGGGGACTATCCCAATAATATTGCTGAAAAGTATGGATTCCAAGACTTGCGGCAGTTCATGGATGAGTATGTGGAGACTGCAGATATGCTGAAATCTCATATTAAGGAAACCATCACACAAGGAGAGGATGAAGACATCTATGAGTCCATGTCCAAAGCTTCCACAGACATCCTGATGAAATACTCTCTGAACCCAGGGTGTGATGAGGACATCTATGAGTCAATGATGGAGCTGAACCCTGATTGTTTAGAGGACATATATGAAGACATGGAAAAAGCAGTTCAACAAGCAAATACAGTCCCTGATCCTTTTGCAATGAATCCACAAGAGACCATGCTCCGTAAATTTTTAGAGgGGAAATCTGGGACTGAACAAAAACAGGCGTTAGATGAGGCAGCGGAGGAGTTGGAAGGACAGAGTGAACAGGAAGAAGAAGACCCCTACAAGCTGTGTTTGGAGGATGATGTGTATGATAGTGTGGAGCAGGGGGCCACTGGCCTGCCAGAGATATTCAGCCGTCCACCTGCACCCATACCTAGACCCCCCATCTGCAGTGAGCCAGAAGAAAGAGAAACTTACATTTCCAAAGTGAGACCAGTCAGGGATAGGCCTTCTACAACCACCTATGACCCATTTGCTGGGATGAAGACCCCAGGTCAGAGGCAGCTGATTTCGCTGCAGGAGAAGGTGAAGTTAGGTGTCATCACTGTGGAAGAAGCTGTCGACGAGTTCAGGGATTGGCAGTCTAACCAAAAGAGCAGGTCTGAATCCTTACGGTTCCAGCAGGAAAATCTGAAGAAGTTAAGAGACAGCATTACCAGACgccaaaaagagaaaaacaagaccGaACTAGAGATCACTGCCCCTTATCTTCCTAATCAGAAGGCACCGGTAACTTTGGAGTGTGCTGTTTATGAGCCCAGCCCACGAATGGTAGCTGTCCCACCTTCACCAAATAGACCAATTCATAGGGGCAACTGGCAAACTGGAAGCACCACCAGTACATCAAGTAATGGCAGCAACAGATCAAGCACACGTAGTAACCTCAGCTTCAGCAGTGGAGCAGAAGGGGACAATGAGGACAACTCAGAGTGTTACCCTGGCCCCAGTCCACAACGTGTGATAGAGGGAGCTCCGGGACTGCCCCCCCCCCGAATTCCACCACGACCCTCCAACAGTCCCCCAGTCGCTGATCCATCAACAGAGCCCAGCTCCACCAATCAGAGCTGCCCATCAAAACAGACCACATCCACCTATCATATCTTCCCGTCAGTACAGCCCACCTCCACCAATCAGATCTTCCCGTCAGTACAGCCCACCTCCACCAATCAGATCTTCCCGTCAGTACAGCCCACCTCCACCAATCAGACCCGCCCGTCAACACAGCCCACCTCCACCTGTCCCGCCTGCTCGTCAATACAGCCCACCTCCACCAATCAGACCTGCCCGTCAACACAGCCCACCTCCACCTGTCCCACCTGCTCGTGA

Function

GO: NA

KEGG:

id description
K12230 PIK3AP1, BCAP; phosphoinositide 3-kinase adapter protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179384 lncRNA upstream 51639 21991512 ~ 21994674 (+) False G142620
TU179383 lncRNA upstream 51639 21992414 ~ 21994674 (+) True G142620
TU179340 lncRNA upstream 239653 21801019 ~ 21806660 (+) True G142580
TU179331 lncRNA upstream 279769 21766341 ~ 21766544 (+) True G142572
TU179313 lncRNA upstream 386535 21574114 ~ 21659778 (+) True G142556
TU179464 lncRNA downstream 24387 22091701 ~ 22094748 (+) True G142664
TU179494 lncRNA downstream 581626 22648940 ~ 22706530 (+) True G142690
TU179529 lncRNA downstream 733538 22800852 ~ 22801060 (+) True G142722
TU179531 lncRNA downstream 760787 22828101 ~ 22828463 (+) True G142724
TU179534 lncRNA downstream 826534 22893848 ~ 22894101 (+) True G142727
AMCG00003363 mRNA upstream 290379 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003361 mRNA upstream 297712 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003359 mRNA upstream 868783 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003351 mRNA upstream 1281628 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003348 mRNA upstream 1452813 20492359 ~ 20593500 (+) True AMCG00003348
AMCG00003371 mRNA downstream 67587 22134901 ~ 22144437 (+) True AMCG00003371
AMCG00003372 mRNA downstream 256518 22323832 ~ 22487911 (+) True AMCG00003372
AMCG00003374 mRNA downstream 644578 22711892 ~ 22716708 (+) True AMCG00003374
TU178898 other upstream 2413240 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 2509222 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 3354109 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 4367791 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 5487107 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile