RNA id: AMCG00003371


Basic Information

Item Value
RNA id AMCG00003371
length 272
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00003371
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22134901 ~ 22144437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataaaaTGACAGCtctacaaaacattaatttgaaaatggatcCTAAAGATCTTCAGATCAGGACTATAACAGTGGAAAAGTTGCTTGAGCCACTGATCATACAGGTAACAACTCTGGTGAATTGCCCTAAAAATCcatccaacaaaaaaaaaggccgCTCCAAAAGAGCCAAGGTACTCTTGAAGTCAGTGGAAGAAGCTACTCTGAATTTAATCAATAAGGGTGAAAAGATTGTGAAGGAAACTGCCATACTAAAGGAAGAGCTAACTGCA

Function

GO:

id name namespace
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179464 lncRNA upstream 40153 22091701 ~ 22094748 (+) True G142664
TU179384 lncRNA upstream 140227 21991512 ~ 21994674 (+) False G142620
TU179383 lncRNA upstream 140227 21992414 ~ 21994674 (+) True G142620
TU179340 lncRNA upstream 328241 21801019 ~ 21806660 (+) True G142580
TU179331 lncRNA upstream 368357 21766341 ~ 21766544 (+) True G142572
TU179494 lncRNA downstream 504503 22648940 ~ 22706530 (+) True G142690
TU179529 lncRNA downstream 656415 22800852 ~ 22801060 (+) True G142722
TU179531 lncRNA downstream 683664 22828101 ~ 22828463 (+) True G142724
TU179534 lncRNA downstream 749411 22893848 ~ 22894101 (+) True G142727
TU179536 lncRNA downstream 749758 22894195 ~ 22894481 (+) True G142729
AMCG00003370 mRNA upstream 67587 22046313 ~ 22067314 (+) True AMCG00003370
AMCG00003363 mRNA upstream 378967 21753346 ~ 21755934 (+) True AMCG00003363
AMCG00003361 mRNA upstream 386300 21525637 ~ 21748601 (+) True AMCG00003361
AMCG00003359 mRNA upstream 957371 21151851 ~ 21177530 (+) True AMCG00003359
AMCG00003351 mRNA upstream 1370216 20760320 ~ 20764685 (+) True AMCG00003351
AMCG00003372 mRNA downstream 179395 22323832 ~ 22487911 (+) True AMCG00003372
AMCG00003374 mRNA downstream 567455 22711892 ~ 22716708 (+) True AMCG00003374
TU178898 other upstream 2501828 19618881 ~ 19633073 (+) False AMCG00003323
TU178857 other upstream 2597810 19535693 ~ 19537091 (+) True G142172
TU178734 other upstream 3442697 18666767 ~ 18692204 (+) False G142078
TU178585 other upstream 4456379 17676279 ~ 17678522 (+) True G141962
TU178303 other upstream 5575695 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile