RNA id: AMCG00003375


Basic Information

Item Value
RNA id AMCG00003375
length 666
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00003375
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22832189 ~ 22833510 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAACCTTTGTTTAATTTGCCAAACCACTGTAGCAGTCTGTGAGGTCGCCAAATTGAGGTGCCACTTTGAATCAAAACACAGTAATTTCAACGCGGCCTATCCTGCTGACAGTATCTTAAGATGTGACAAAATTGAAAGTCTGAAATCTTCCTATCAAATGTCAAATTTGATTTTCACAACATCATCGACTGTAAAGTGGGCACTGTCTATAAAGACAAAGCCATTCCTGGATTCTGAGTTTGTAAAGGAGTGCACGTTAGAATTACTGGACGAGCTCTTTGAGACAAAAAAAAGACTACATTCACAACCGCATCAAGCAAGTTCCAATCATACCTCCGTCAAAATAATGCAAGAATTAATTAACAATCTCATCAAAAACTTTCAAATGAGATTTGAGAACTTTAAAATTCCAAAAGATGTTATCTTATTTGTTTGTgatccatttgttttctttgctgaCAGACCTTGCTCTTCTAAAGCAAAGAAGATTCTGGATTCAATTGACAAAGTCCGTGTTTTCCTGTATGAacgttataaaaaaaaaaaaaaaaaacggatcACGGATGAACATCTCCAGCAGTGCCTGCACCTTGCCTTAACCACCTACAAACCAGTCTTCACAAAGCTGGCCAGAGATCGAAGATGCCACCTCTCCCATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179532 lncRNA downstream 3729 22828072 ~ 22828460 (-) True G142725
TU179515 lncRNA downstream 125678 22702582 ~ 22706511 (-) True G142709
TU179466 lncRNA downstream 737561 22091701 ~ 22094628 (-) True G142665
TU179463 lncRNA downstream 746998 22084918 ~ 22085191 (-) True G142663
TU179460 lncRNA downstream 762207 22066953 ~ 22069982 (-) True G142661
AMCG00003373 mRNA downstream 724107 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003367 mRNA downstream 812175 21994244 ~ 22020014 (-) True AMCG00003367
AMCG00003365 mRNA downstream 841769 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003366 mRNA downstream 965604 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003369 mRNA downstream 1017405 21801030 ~ 21814784 (-) True AMCG00003369
AMCG00003377 mRNA upstream 146990 22980500 ~ 22985638 (-) True AMCG00003377
AMCG00003376 mRNA upstream 152162 22985672 ~ 22986067 (-) True AMCG00003376
TU179004 other downstream 2955427 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 3262574 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 3265602 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 3268911 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 3278077 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile