RNA id: AMCG00003377


Basic Information

Item Value
RNA id AMCG00003377
length 786
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00003377
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22980500 ~ 22985638 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCATCCACTCAAAGGAGCAGCGGCTGTACATGTCCAGTGGTTTTGATGACATGGCGCTGCTCCATATGCCAATTGATCTGGAAGGGAATCACTTGTTGGCAGAATTGACAGACCGGCTACAGTTCATCGACCTGCTGAAGAGGATGCTGAAGATGGACCCAAATGACAGGATCACCCCCATCCAAGTCCAGAACCATCCATTTGTCACCTTGACACATCCATGCGAGTTCCTCCCCAGCACATATGTTATGTCTTGTGCCCAGAACATGGAGGCACAGCAACTCGTGGCTGCAGAGGGGGACGAAGGGCTCCATGGGCAGCCAGATATCATCACCCCAATTATCCTACAGGCACCGGCAGCAGACACCCAACTCTACAACCCCCCCAGGCCGGGCACTATGGGCAGAGCTCAGCTCACCACGCCGGCCAGGAGAAACATCTCCCCCACCCTGGGCACTATGGGCAGGGCTCGGCTCACCACGCGTGCCACGAGAAACAAtatatgGCTGCTCTCCCGGCTGCAGGCTTCTCTCTCGGCTGCCCTCGGCTGCAGGCTTCTCTCTCGACTGCCCTCGACTGCAGGCTTCTCTCTCGACTGCCCTCGACTGCAGGCTTCTCCTCGGCTGCCCTCGGCTTCAGGCTTCTCTCTCAGCTGCCCTCGGCTGCAGGCTTCTCTCTCGGCTGCCCTCGGCTGCAGGCTTCTCTGGGCTACACGAGAGAGGACTAGGTGGCTGCTCAGGCGAGGGGAACACAAGGCACGGGAACTGGCACCTGCAGTGTAG

Function

GO:

id name namespace
GO:0045634 regulation of melanocyte differentiation biological_process
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179532 lncRNA downstream 152040 22828072 ~ 22828460 (-) True G142725
TU179515 lncRNA downstream 273989 22702582 ~ 22706511 (-) True G142709
TU179466 lncRNA downstream 885872 22091701 ~ 22094628 (-) True G142665
TU179463 lncRNA downstream 895309 22084918 ~ 22085191 (-) True G142663
TU179460 lncRNA downstream 910518 22066953 ~ 22069982 (-) True G142661
AMCG00003375 mRNA downstream 146990 22832189 ~ 22833510 (-) True AMCG00003375
AMCG00003373 mRNA downstream 872418 22104127 ~ 22108082 (-) True AMCG00003373
AMCG00003367 mRNA downstream 960486 21994244 ~ 22020014 (-) True AMCG00003367
AMCG00003365 mRNA downstream 990080 21968705 ~ 21990420 (-) True AMCG00003365
AMCG00003366 mRNA downstream 1113915 21818186 ~ 21866585 (-) True AMCG00003366
AMCG00003376 mRNA upstream 34 22985672 ~ 22986067 (-) True AMCG00003376
TU179004 other downstream 3103738 19814142 ~ 19876762 (-) False AMCG00003337
TU178878 other downstream 3410885 19566913 ~ 19569615 (-) False AMCG00003320
TU178867 other downstream 3413913 19565395 ~ 19566587 (-) False AMCG00003320
TU178865 other downstream 3417222 19555443 ~ 19563278 (-) False AMCG00003320
TU178862 other downstream 3426388 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile