RNA id: TU173884



Basic Information


Item Value
RNA id TU173884
length 1818
RNA type TUCP
GC content 0.51
exon number 2
gene id G138245
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 144926 ~ 146840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TATATCTACTGTATCTCAGGCCGTTTTATTGAAAAGAAGAGTCAGACAGTGACGGAGGAAAACTACCTTTCAATCAACTCACCCAACCGGTGCGGTGTGTTCCCACCACACTGACCAGCAACGCCAATAAATACAGCCAGTCCAAgtatttctgattttatttcaattggTTTTTGGTTTTACTTTCATTGGTGACACAATTCCACACATCTGTGTGCAGGTATATAAATAAGGCAgcaggaaacaaaagaaaaaaaggaaatgaaagaaaagcttttctGTTCCCTTTGTGGTAATGTATTCCTGCGAAAGGCTTCCTGAGATGAAAGCAGAGAGACAGTCGGGCACAGGGACGGTCCGGCACACTGACAGTCTTAGTGTCCACAGATCTGAAGATTTAAATCTCAGTGCACACACAACAAATCACACATGTGAAATACATTCAGTAAAGCAAGAGAGCAGTATATCAGTGGAAAAATAAGAGTCTGTATGTGAGGAGCATCGAAGGCGGCCTGGGACAAAGGTGACCGGCTCACAGTAGAGTGACAGTAAACCAGCGCGGTCTGCTTGAACCCACCAGCTGCAGCCCTGGAAAAGCAGCTTCTCTCAGCTGGTCCAGTCAACTCAACACTGGTTTCTGCAAGGCAACTGGGAGGGCAAGTGCTCAGTGGCCACCTGTTGTTACTAATTAAAATTCGAGatcctgactgactgactgactggactgtGCATTCCAGGGGGGGTGGCTGGTTCCTGTACACACTCATCTTCACTTTGTTACCACACCATGTGTTGTGCGTGTTTATTCACTCCTGGACGAGATCTGATCTCTACACGACAAGCCTCCACCGCCACAAACTCGAGCTTCTCGCTCTGTCCACCTGCATTGTGCACTTGGGGCCGGGGGTCGGCTGGGGACCCCACAGGACTCCATTAATCTGAGCAGAACTATTCGGGTGCCAGGGCTCAGTTGCACTTGTTCTGTTACACCTCTGTTAAACAGGCTTATTTTTCACAACTGAATACATCAGGGCATGTTCTAATAATCAGTGGGATTGCAGCACAGAGAGCTTCATATCAGCAGACGCTCCGGCTATAAAACCTGTTCACAGAGCAAACAACACGGGACAAACCGCACTTTGACCAGGGTAGTCTCAGCCGACCTCAAATAAACCTGAATTGCCATCAAAACACGAGTCAATGTCAGCATAACGAAGCATGACTGCAATTAAAACTGTACAGCAGTCGTTGCGAGAGCAGGCTCTGACTCTGGGGTAAGGAGAGTAAGGACAGCAGCACCGCCAGGCCGAAGGCTTGGAAACCGGGATTCAGCATTCTTCTAGGACGGGTTTAGTCTCCAGCCTCTTCCAGATTTAAAATTATGTTCTCTGTacaaaaatcCAGAGAGGCTGCTAGGAAGAGGGATAAAGGGGTTGGGGGGCTGACAGCTCTGTGCCCGTCTGTTGAGCTCAGAGCAGGTTGGCATCTCCTCACAGTTCCCCAGGGGAGGGAGACGCTCTGGGGTGGGAAGACAGGTGGATGGCTGGGGGGCCAGGGGGCCAGGGGGCCGTGCCGGCAGCTGGACCCCCTACTTCCAGCGGTTGATCCTGCGCAGCTGGATGTAGGCCATCAGCATGCACACCAGCATGATGCCCAGCAGGGCCACCAGGTTCTGCCAGAAGCCCCAGGGGCTGTAGTCGATGCCCTGCTCGGTCATGTACATCTCGCCGGTCACCCTGGGGAGACAGCAGACAGGTACCTTTACCTACAGAGCTCCTCTCTGGTTTGGCGCCAGTGTGTCCATGCAGTGACTGTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173928 lncRNA upstream 80180 227020 ~ 230780 (-) True G138282
TU173958 lncRNA upstream 155242 302082 ~ 305860 (-) False G138303
TU173959 lncRNA upstream 155242 302082 ~ 387075 (-) True G138303
TU173960 lncRNA upstream 155242 302082 ~ 385604 (-) False G138303
TU173957 lncRNA upstream 156558 303398 ~ 305860 (-) False G138303
AMCG00002724 mRNA upstream 25953 172793 ~ 182523 (-) True AMCG00002724
AMCG00002725 mRNA upstream 37501 184341 ~ 189337 (-) False AMCG00002725
AMCG00002728 mRNA upstream 43500 190340 ~ 228169 (-) True AMCG00002728
AMCG00002727 mRNA upstream 108109 254949 ~ 261173 (-) True AMCG00002727
AMCG00002731 mRNA upstream 133974 280814 ~ 292475 (-) True AMCG00002731
TU173921 other upstream 37281 184121 ~ 189258 (-) True AMCG00002725
TU174098 other upstream 661315 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 665905 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 776170 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 776170 923010 ~ 924234 (-) False AMCG00002752

Expression Profile