RNA id: TU173939


Basic Information

Item Value
RNA id TU173939
length 277
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G138293
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 286551 ~ 286827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAGGGCGGAGTAGGAGCCAAGGGACAGGCTGGAGAAGCTGGGGTCGTAGTACAGGTACACCGAGGATACGCAGGTGGGCAGGATGTCGATGACGCCCACGGCGATGATGCGGCCATCCAGCCAGTACTGCTGGTGGAAAGAGCCGTAGCCACAGTCGGGCATGTCGGGGGTGCTCTCAgcctgggggggagggggagagagagcgagagacatcAGAACAGGACacaagagagggggagggagacgAATGCAAtgtgggaaagcaataaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173885 lncRNA upstream 138677 147656 ~ 147874 (+) True G138246
TU173980 lncRNA downstream 140961 427788 ~ 428114 (+) True G138321
TU173981 lncRNA downstream 191409 478236 ~ 478456 (+) True G138322
TU173982 lncRNA downstream 196397 483224 ~ 483602 (+) True G138323
TU173984 lncRNA downstream 197006 483833 ~ 488667 (+) True G138325
TU173986 lncRNA downstream 204414 491241 ~ 492364 (+) True G138327
AMCG00002726 mRNA upstream 9760 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 101870 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 139851 137527 ~ 146700 (+) True AMCG00002720
AMCG00002721 mRNA upstream 149851 128714 ~ 136700 (+) True AMCG00002721
AMCG00002722 mRNA upstream 163787 110925 ~ 122764 (+) True AMCG00002722
AMCG00002729 mRNA downstream 14923 301750 ~ 302264 (+) True AMCG00002729
AMCG00002730 mRNA downstream 63937 350764 ~ 382430 (+) True AMCG00002730
AMCG00002739 mRNA downstream 413493 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 431303 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 449507 736334 ~ 760207 (+) True AMCG00002735
TU174062 other downstream 608001 894828 ~ 898423 (+) True G138387
TU174076 other downstream 624283 911110 ~ 913532 (+) True G138394
TU174081 other downstream 639642 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 639642 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 802451 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile