RNA id: TU173959


Basic Information

Item Value
RNA id TU173959
length 2749
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G138303
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 302082 ~ 387075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagaaagagaTTTCAAAGGCGGGCCACTGAAACATACAGGTTAGATGAACTCGGACGATACACAACACAGGCTGCTGGGTGAACCACGCAGCTTTACTCCCGCACCTCTCTGGGAAGGCAGGGGGTGCGTGTCGACCACGGTCCTGTGTGTGGTTACGGGTCCGGCTCCGGGTCGGGTGGAATTAAGAGGCTCGGGGtcagaaacaaaaggaaaaagctCCCAGGATCTTTGGCTTCTTCTtcacaaaaagaaacaatcaaggtGCATGCTGGGGGATAGACCCCTCTGTGGCGTCTTATTACTTTACCCGCTCCCTCTCCAAACCCTTGACTCATCAATAACAAAGACGGCAACTTCTTGTGCCTTTAAACTCACCTTGTGTGATTATATATAGCGCCTACAGGAAGTCTACAccccatttaaaaatgtccaccttttgttgccttatagcctggaattaaaattgttcTCATCTATTTAATGTATCCACACAGTCAACGCACTTccaagtgaaaatatatatattctagaaatctgtggaaaatgtatatataaaaatgaatcagTGAAATCGCTTGCTTGGATAAGTGTCCGCCCCCTTGTCACAGCAGTCCCCAATGAGCCCCAGTGTGAGCGATCGCCTTCACAGTCACACCCCGAGGGCAGTGGCCTCCCTTGTAgggattcacatgatttcaagaTAAATTCCTGTAGTTCTTCTGCTGGGTGGAGCGTTTCAGAGACGCCTCACCcttgagcaccaaggagctttcagagAACTCCAGGACAGAGATGTCGAAAGGCACAGATTAGGGGACGGgtataaaaacatatcaaaggccttgaatatcctaTGGAGCCAGCGTCAAGTGTTTGGCATCACCAAGACCcagcctagatcaggccatcccttCAAACTGGATGAGCGGGCGAGAAGGAGAAGGGTCAGAGAGGCTACTGAGTGgccaagagctacaggcttctatggccaagactggtccaAGTGTGGATGTGACAACAATGCCCCAGCACTGGACagatctggcctgtatggtagagtggcaaGAAGGCAGCCGTTATTCAAGACAGCCCACCTCGACTCCCAGCTCTGCAGAACAGACATTCGGGAGATTCTGAGGCCGTGTGGCGAGAGCTTTGCGGTTTGACAGAACTTTCTGGCCTTTGTTTGggacaaacccaacacagcgccTCACACACAGAGCGCCATCAGTGCTGGGATGCCTGGAGGGCACCGTGTGACGGGCTGTTTCTCATGGGCAGGACTGGGGCTCTCGACAGGACAGAAAGGAGAATGAAACTGAAGTGGAAGCAGTTCTAGGGGGTGTAGATTTCTGTaggagtgtatatacacacatatatggataaaacaaactgattaaCTTGAGTTGAATGAGCAcgaaaaaaaacaggaatattaagaaaataaaaatctaaaagcTCTTGCTCTAGCCAGTCTGAGTGTCCGGTGCCAGGAGAGCAGGTTCTCCTGGACTGCGTCCTGCGCCCTCCCCCCACCGGCGTCCCTGCTGGCGCACACGTGCTGCTCAGTCTGGGCTGTCGGCACCACAACGCTGTTTTCACATTCTCTGTTTTTTCGGGACCACACTGGATCAAAAGAGCCTGGCAGGCgttcaagaaaacaacaacagcagcagaaaaGGGCCGGGGCAGATTCCCGGCTGTACATCTGGAGCTCCGCGAGGGACCCGCCGCCACAGCGCCGGGGACGCTGCCTGGTGAGGAGAGCCGCGGCCTCCGCTCGGCCGTGATGGCGCTCGATCTCGCCCCACACCCGATTCCCACAGCGCAGAGGGAGGCAGCCTGTGGCCAGTCGCTCGGGACGGCTCCCCTcagagactgacacacacacacacacacacacacacacacacacagcgatgTTTATTCCCCTCTTCTATAATGCAACATTAACTATCCCCTTTCCTTTTaagacaaaatggaaaatctAAGATGTAAAAGCAACACGAAACCCCAGATATGTCCTTAACtactgagaaacaaaaacaatcgaaaacaaacaaaaggaagagAACTCGTGGTCCGAGGACAGAGTGTTGCATTTCTCCGGGGTGAGGAGAGTCCGCCCCCCCGGTCAGTTCAACACGGGCTCGGACAGCAGTTACACTTCAGAacaatatgttcaaatgccGCGGCTCCGGGGCAAACACACCGGGAACCTCGTCTCACTGTGGGTTTGAGGAAGAGCCGGGAGATTTCAGTGCAAAACCCACCACCCCTCCCCagataacataaaataaaataaaagcaagaaaCGTCAGTGTGGGTCTATATATAATTCGGGTTTGGGGATGATGTGATAAAGGAAGGTGCttagagagagatagagacacagagagcgaaagagagacagaNNNNNNNNNNNNNNacagagagagagagagagagagagagagagagaagggtgaGAGAGTCAGTGCACATGATATGCAGTACGGTTAAAGTGCCGTCCTGCCGAAGGGTCAGGAGAGAGGACAGGGACGGCGCTGGAGCCGGTCCCTCTAGGCTCGGAACAGCAGCATCCTCTCGGCGCAGGCCTGGCCCACCAGCTCGCCGTACTCCTGCACGTCCTTCTCGTCGCAGGGCCCCTTGCGCTTCCTGGCGTAGGCCGCGAAGGGCATGACCGTCCGGCAGTACAGCACCCGCAGCCGGCCCAGCTCCCTCAGGGTGCCCACATCCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173928 lncRNA downstream 71302 227020 ~ 230780 (-) True G138282
TU173983 lncRNA upstream 96149 483224 ~ 483603 (-) True G138324
TU174012 lncRNA upstream 360419 747494 ~ 748469 (-) True G138352
TU174034 lncRNA upstream 414139 801214 ~ 801767 (-) True G138371
TU174037 lncRNA upstream 416498 803573 ~ 805155 (-) True G138373
TU174099 lncRNA upstream 418685 805760 ~ 807058 (-) False AMCG00002743
AMCG00002731 mRNA downstream 9607 280814 ~ 292475 (-) True AMCG00002731
AMCG00002727 mRNA downstream 40909 254949 ~ 261173 (-) True AMCG00002727
AMCG00002728 mRNA downstream 73913 190340 ~ 228169 (-) True AMCG00002728
AMCG00002725 mRNA downstream 112745 184341 ~ 189337 (-) False AMCG00002725
AMCG00002724 mRNA downstream 119559 172793 ~ 182523 (-) True AMCG00002724
AMCG00002734 mRNA upstream 96827 483902 ~ 484300 (-) True AMCG00002734
AMCG00002732 mRNA upstream 98761 485836 ~ 513387 (-) True AMCG00002732
AMCG00002733 mRNA upstream 177585 564660 ~ 579964 (-) True AMCG00002733
AMCG00002737 mRNA upstream 363560 750635 ~ 751030 (-) True AMCG00002737
AMCG00002738 mRNA upstream 376054 763129 ~ 768823 (-) True AMCG00002738
TU173921 other downstream 112824 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 155242 144926 ~ 146840 (-) True G138245
TU174098 other upstream 421080 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 425670 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 535935 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 535935 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 535935 923010 ~ 925398 (-) False AMCG00002752

Expression Profile