RNA id: TU173961


Basic Information

Item Value
RNA id TU173961
length 1423
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id G138304
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 335737 ~ 342518 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagaaagagcgagagagagagagagagcgagagagaaaccTTTGTAAACCTGACAAAGCTGCCGAGATTAGAGCAAGTTTCTCGGAGAGGGCGAAGACGCACAACAGGCGAGCCCAGTGTGATGGATTTACTCGCTTTGGAGAGCCTTCCTGCGGCGCGCAGGCACCCGTCCCTCTCGGTGTAGCCCAGCCTGCATCGCCGGGGAAAACACTTCATCTGTGTTGATCAGAAGTAGTgaaaaaagagaaggagaagaagccAAGCAGtgggggagaaggaggagaagaagaagaaggagtgAGAAGGGGGAGAAAAGTTTTCCCGGATCTCTCGGAACTGCAGCCGTCTCTCTTGGATATAAAACCCGTCAATTGGAGTTGCTCGGAGGGTCATGGTCGCTCGGGTCTGCCCCTGGGTCCCGGTGCTGGTTCGGGGCGCTCGGTGAAGTCGGGGGTGTCGGTGGGGGAGGACGCGCTCTCCGCGCCTGGATCGGCCGAGTCTGCGGCGGTGCGCCAGGACCTCGCCGTGCGGGACGCTCCACGCAAGCTCTGGAGACGCGAGCGCTGCTGGCGCCAGGGTCGGAGTCCCGCGGTTCATGAGTCGCCAGAGACCCTCAGATGGGATCAGAGAGCGGGCGCAGCGCAGGAGCATGGGGTCTCTCCACTAACAGCATGTCCACCTGGGTTTGTCTGCTGTGCCTGTCTGTGGTGTCGATGGCAGCAGTCTCCGTGGCAAGGCCGCCGTTCATCACCACGGAGGACACCACGCTGGAACCCGAAGAAATAGATCCTGGGGAATAAAAATACTCTGCAGGCAGGGAGGGGTCCGGCTGGCGTCTGGAACTAGCACCAATGTCTGGAACCAGCACCAGCGTCCCAGGGAGCTCAGCGCTGCACGGGTGTCCGCAGTGACTCGAGCAAAACGGGTTTGAAACGGGCTGCGGTGATCAAGTGGTCTCTCCACTGAATTTCAAGTAGGGAGACAGATAAAGAAAATTTCAAgtagggagagggagaaggagagagtgtgagagagacagagagctctgtgggtctgtgtgaatgggaaTGCTGGCCTTgatgtttgtctgtctgtgatgAGTTTCACAGCTCCCTCCCCCCGTCAGTGTTTATCTTACCTGGGGGGTAATCagtaatggagagagagagagaggacaggagaggCCGGCAGGGTGAGAATTGCATCTCCGGGCCCCTGGGATTTGCTTCACGCTGTCATCCCTGTGCAGGAGCTGCTAATAACGTGTGGAGAGGACGGGATGCTGTTTATTGGGCGGCGCTCGGAGACGCGGCGCTGTCGGTCCCCTGCACTGGAGCTGCTAATTGCCAATACAGGCGGCGGCAGTGAGAGGCGCTTTCGGGAAATAAGTGTCTTCACACGCAGGGTCCTGTGAGGGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173958 lncRNA downstream 29877 302082 ~ 305860 (-) False G138303
TU173957 lncRNA downstream 29877 303398 ~ 305860 (-) False G138303
TU173928 lncRNA downstream 104957 227020 ~ 230780 (-) True G138282
TU173969 lncRNA upstream 23689 366207 ~ 371624 (-) True G138310
TU173983 lncRNA upstream 140706 483224 ~ 483603 (-) True G138324
TU174012 lncRNA upstream 404976 747494 ~ 748469 (-) True G138352
TU174034 lncRNA upstream 458696 801214 ~ 801767 (-) True G138371
TU174037 lncRNA upstream 461055 803573 ~ 805155 (-) True G138373
AMCG00002731 mRNA downstream 43262 280814 ~ 292475 (-) True AMCG00002731
AMCG00002727 mRNA downstream 74564 254949 ~ 261173 (-) True AMCG00002727
AMCG00002728 mRNA downstream 107568 190340 ~ 228169 (-) True AMCG00002728
AMCG00002725 mRNA downstream 146400 184341 ~ 189337 (-) False AMCG00002725
AMCG00002724 mRNA downstream 153214 172793 ~ 182523 (-) True AMCG00002724
AMCG00002734 mRNA upstream 141384 483902 ~ 484300 (-) True AMCG00002734
AMCG00002732 mRNA upstream 143318 485836 ~ 513387 (-) True AMCG00002732
AMCG00002733 mRNA upstream 222142 564660 ~ 579964 (-) True AMCG00002733
AMCG00002737 mRNA upstream 408117 750635 ~ 751030 (-) True AMCG00002737
AMCG00002738 mRNA upstream 420611 763129 ~ 768823 (-) True AMCG00002738
TU173921 other downstream 146479 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 188897 144926 ~ 146840 (-) True G138245
TU174098 other upstream 465637 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 470227 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 580492 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 580492 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 580492 923010 ~ 925398 (-) False AMCG00002752

Expression Profile