RNA id: TU173980


Basic Information

Item Value
RNA id TU173980
length 327
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G138321
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 427788 ~ 428114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcctatccagtctgtttttgaatattcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgtctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccaggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173939 lncRNA upstream 140961 286551 ~ 286827 (+) True G138293
TU173885 lncRNA upstream 279914 147656 ~ 147874 (+) True G138246
TU173981 lncRNA downstream 50122 478236 ~ 478456 (+) True G138322
TU173982 lncRNA downstream 55110 483224 ~ 483602 (+) True G138323
TU173984 lncRNA downstream 55719 483833 ~ 488667 (+) True G138325
TU173986 lncRNA downstream 63127 491241 ~ 492364 (+) True G138327
TU173987 lncRNA downstream 65952 494066 ~ 494304 (+) True G138328
AMCG00002730 mRNA upstream 45358 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 125524 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 150997 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 243107 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 281088 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 272206 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 290016 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 308220 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 348476 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 401315 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 466714 894828 ~ 898423 (+) True G138387
TU174076 other downstream 482996 911110 ~ 913532 (+) True G138394
TU174081 other downstream 498355 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 498355 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 661164 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile