RNA id: TU173981


Basic Information

Item Value
RNA id TU173981
length 221
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G138322
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 478236 ~ 478456 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgcctcgtctaaacccatgttgactatctccaagaatatggttttcattaagatgctcctctattttctgtctaatcattttttccaacattttacaggtgatgcaggtgagactgattggtctgtaatttcctggctcagtttagTCTCCTTTCTTgaggattggtatgacatttgctgtcttccagtcagttggcacatcccctgttctaagtgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173980 lncRNA upstream 50122 427788 ~ 428114 (+) True G138321
TU173939 lncRNA upstream 191409 286551 ~ 286827 (+) True G138293
TU173885 lncRNA upstream 330362 147656 ~ 147874 (+) True G138246
TU173982 lncRNA downstream 4768 483224 ~ 483602 (+) True G138323
TU173984 lncRNA downstream 5377 483833 ~ 488667 (+) True G138325
TU173986 lncRNA downstream 12785 491241 ~ 492364 (+) True G138327
TU173987 lncRNA downstream 15610 494066 ~ 494304 (+) True G138328
TU173988 lncRNA downstream 16003 494459 ~ 494798 (+) True G138329
AMCG00002730 mRNA upstream 95806 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 175972 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 201445 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 293555 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 331536 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 221864 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 239674 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 257878 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 298134 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 350973 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 416372 894828 ~ 898423 (+) True G138387
TU174076 other downstream 432654 911110 ~ 913532 (+) True G138394
TU174081 other downstream 448013 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 448013 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 610822 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile