RNA id: TU173984


Basic Information

Item Value
RNA id TU173984
length 4130
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G138325
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 483833 ~ 488667 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CacggcattttttttttttccaagctgtaacttaaaaaaatgtaaaaaaacaaaagaggtaAACTACCATCTCATTTCAGCGCTTATGgttggtttaaaatacaataaattaataattataataatagcaatCATTTTGATAAGGtagtgctaaaaaaaaaaaaaaaaaaaaaaaaaaagggagacaGATTAATTTCCTCCCACTCTTTACAGAAGAGCTCGCATTTCTCCCCAAGGGATCGAATACTTTGAAATACTGTGCTGTTGCGCTGTTGCTCTGTTGCGCTGCGGTGGCGCAGTCTGCTGTGCGTAGTCTCTGCGACGCTGTTGCTGTGTCAACTACACACAGGGTCCACAAGCCAGCACTCTGCTCGGCCCTCCCAACATGGCTGCCGGGCACAGCAGGACCCCACAGTGGGCGGAGCCTGCAAGTTCCCTATAAACGTCGCTCTCCACCTTGCATAGCATCGCACTGTGTCTTATATTCTTTGATCTGAgctcaaattatttaatttattccttATCTGCTTCCCACTCTGCAGAGTGCTTTCTGAGCTGTATCCAACACCCTGACAGACACTTGTCCACAGACTGGGTGCCCCCCTGAGGGGGCACAAAGTGCTTCTTTGCGCAGAGACTTGATTCCACCGGGTTACAGTTGATTTTTAATCAGATTACAACTGTTATCGATTTTGTTATGAttttaaagcttaaaaaaacCTTTAATAAACAACCAGGACGGTCCAGGTCTGCCGGCCGACAGGAACCACCCGTGCTTCACCTCTGTGCCATCTGGGTCTGTCCAGAGCACGCCGTGGTCACAGGGAGCCGGCCTGGCACtcagtatcagtatcagaaGGCAAAGGGTTAATTAGtagttgtattaataataatgaaaaatctaTAGAAAGAACAGGAACAAAATCATCACTTGAATCACTGTACCACAAACCCTCCCGGACTGTGGAAAGAAACGCTCCCCTCTCCCGGTCAGAGACGCACACAGCGGTGAACACTGGAGGAGCAGGGGCCGCAGGGTGGAGAGCGGAGCAGGGCGTGTGGCGAGGGGGCAGGTCTAGGCAGAGGGGAGCGGGGAGCGGGGAGCGGCCTCAGCGGGCAGTCGGTGGGGCGGCTCAGCCCAGCCCCTCTCAGCCCTCCTTCTCCGCCCTCTCCGAGGGGTCCGCAAGCTCGGCCAGCAGGTCCTCCCCGGCCCCCCCGGCGCGCGACGCCCACAGCAGTGCCCCCTCGCGCAGCCCCAGGCCCCTCAGCAGGCGCGCGTAGTCCGCGTACACCGAGCCCATCAGCTTATGTGTGTTGTCGTTGGCTTCCATCACCCCGCACTTCAGCGAGGCTTCGATGAACAGCGCTGCTCTGTCAAAGTACCTCATGCTGCAGGACCGGGGGGGGgaccaaaaacacattaaaaatgcaataacttCCCCATCAGCATCTGGGAAACACGTCAACACACATCTCTTGCCCCCGTTATTTAATTccatgtcatattttaatttactgtgcATCACATTCACGCAGAGGCGGCTGTCAGGAAGTTTCGGGAAAGAAGATAAAACTCAGTTCTTATCCTGAAGCTGTCGGCTCGGCTGCTCATTAAACCGGCTTTCTAATAAACAGGGCACAACAAACACCTGACTGACGAGAGTTCAGACACCGACgcagagacagagaaactgCGCCTACTTCACACAAGCTAACTACACCCTCCTTCCCAGGGGGCTCTGAGAGACACTACGCCCCCTAGTGGCTGAGGTGtcactgtggggggggggcagagtgtGGTTCTACAGTAGCGGACGTTACCTGTGCAGCATTTCTGCCACCCTCTGGAAGCAGCCCAGGGACAGGAGCACCAGCATGGCCTTGGACTTCTGGTTGACCTGGGGAGAGCACAGGTGATCCACCCAGCGCTTCAGCACCTCCGAGCACTCGGGGAAGCTCAGACGCACCTGGGGGGGAAACGGCAGATCAGTCCTGGCACACCGGTGCGTCACAACACCCCCCCTTGCCTGGCAAGAGCAAAGGGTTGGCAGTGGGCAACATCATAAACACCACCATGACGGCAACGTTATTGCACCAGCGGAATCAGAGGAAATGACACGTTCACAGCAGACAAAAACCCTGATAGTGACACAGAATGACACAGAAAAAGAtccctggcatgtctgtgccgAGAGGGAAGCGGCTCAGAGACACTGGTGCCCTGCCATGATCTAGCCCAGCCCGGCACACAGACCCATCTCTCTGTGACACTCTGACTGCAAACTGAGGCTGCATGCAGTTTCAGATAATACTGCCCCCCCTTACCTTGGCCAGCCAGGCCGCGCGGTTCCACTCCCCGTACGTCTGCAGATAGCGGCAGGCATCAGCGGCTTTATCTATCAGGCACAGCAGCTGCACCCCCTCTGGAAGAGACGCGGCCACAGTAAACCAGCAGCACAGCAAGGACCAGTCAGGGAGATCTATTTCACTCAGGCCTTCGTTTACAGTCCGCTTCTCTCAATCAGGAGAGAGCGGGGATAAGACAGGAACGTTTACTGCGCTGGCTGGCGCCTTGGGAAAACCGTCTCTCTCGGCTTTCAAAGCGGAATGTCGGCTGAGGTGGACGGGATGCCAGAAGCGGACCAGGAAGGACTGAGATGCTTACAAACACAATTACTTCCCTTTACTTTTTTCGAAAACCTCGAATTCGTATTGCCTTGCGAAAATTAAACACTTTAGAGCACAAATCAAGTCTGCTCTTTCCCGATAGTTCCTCAGCACAAGGGGTTTTACCAGCGCAGATGACATCTCCATCATTTACACCTGACTGTCAGGCAGCCCGGTGCCGGCCAACATTAGTGTCGATGGGAGATAATAGGTCTGCCAGCACAGCAGtcactttattttctctctgtcacGAAGCTAAAAACCTATCAGCGCAGTGTCGGCGATCGTCTCTGTGACATCGGAGAGACACGGTGCCTCAGGCTGCGTAGGATCCTTAACTGCAGGCCTGGAGACAACAGTTCCATGGCTGTCTCGATTAAGTCACTAAGAGTTTGCATTCAGTCAATACGGGCTGCACTGCAGGTTCTTCCAGACTATGATCCAACCCGTCTCATAAGAGGACACTTCTGTTGTATCCCCCCAGAACAACTCTCACCTCCTGACTCCTCCCACCACAGACCCCCAGATACAATTTTTCTCCTGTggagtttttttaattgcatctcTCCCTTTTCTGTGCCTGATGGATATATTGACCACCGTGCCATatctgtccctgtctgtcttcAACCTGTGACagtcagaggagagcaaccagacttactccaagtctgaagggaatgtcctactgagagactgagggaactgaaccttctcatcctggaacagaggaagctacgtggggacttgattcaagtcttcaaaatcatgaagggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccgggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttgatcactcagttattaatggacaccaaacgagcacgatggggtgaatggcctcctctcaactggacactgtctcatgttcttatgttcttaacataGTATGATATTGTATTATGGCAtaaaacgagcacgatggggcgaatgctCTATGTCAACTtgctgtgaagggcgctatacagaCTAAAAACTGAGTGAGGATCGATATTTAAACCCAGAAGAGACGTGCCGACATACCTGCCAGCTTCCCGTTGGCGATCATGTTGGTGGCGACCAGTTTGATGGTGCTCTGCGAGGGGCCGGAGGAGGTGATGGTGGTGACCAGGCAGGCCTTCAGGGAGTCGCAGTAGTAGCTGGGGTTCTCCGCACTCGtctccagcagcagctgcacGGCCCTGTCGGTCTGAGAGTGCAGGCGGGGGGGTGAGCAGGGACTGGACCGCAGAGAGAAACGCTTCCCTCAGACAGGAGGCTCTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173982 lncRNA upstream 231 483224 ~ 483602 (+) True G138323
TU173981 lncRNA upstream 5377 478236 ~ 478456 (+) True G138322
TU173980 lncRNA upstream 55719 427788 ~ 428114 (+) True G138321
TU173939 lncRNA upstream 197006 286551 ~ 286827 (+) True G138293
TU173885 lncRNA upstream 335959 147656 ~ 147874 (+) True G138246
TU173986 lncRNA downstream 2574 491241 ~ 492364 (+) True G138327
TU173987 lncRNA downstream 5399 494066 ~ 494304 (+) True G138328
TU173988 lncRNA downstream 5792 494459 ~ 494798 (+) True G138329
TU173991 lncRNA downstream 17691 506358 ~ 506710 (+) True G138332
TU173992 lncRNA downstream 18131 506798 ~ 507401 (+) True G138333
AMCG00002730 mRNA upstream 101403 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 181569 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 207042 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 299152 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 337133 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 211653 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 229463 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 247667 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 287923 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 340762 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 406161 894828 ~ 898423 (+) True G138387
TU174076 other downstream 422443 911110 ~ 913532 (+) True G138394
TU174081 other downstream 437802 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 437802 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 600611 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile