RNA id: TU173986


Basic Information

Item Value
RNA id TU173986
length 1124
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G138327
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 491241 ~ 492364 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggCCCGTGTCATGCCTGTGAATTCCATTTGCTACACTTAGACAACCTGTCTCCTTGAGCAGATCAATATTCAGACGGCGACTCGGTGGAGAAGAGGCTTGTCTCCTGACGGCTGGCGGCTCTTTTCATCGTTGGCATATTCATTTCCGCTCCAGACAGAGCGGATAATAAATGGAAGTTGACTTTTCACCTCGTCTGCCTCTCGTTACAGCGGGTCCCCTCGGATTGTGGCAggtcacaaaacacacagaggaaCCTCCTAGCTTGGCATGAACTACACATGTAGCTGGAAGGAGGCCAGAGCATCTCCGTGTGAAACTGAGCACAAGATCCACAACACGGCACTCCCTGTGTCTGCGGCACACACACCTGGgcacaacacacaaaatcaaGCGACCACAGacgtttgtgcgtgtgtgtgtcacagttaTATGATctgtaaatgtttgtgtgtgtaattcatTGACACATGTTTAGAAGGAACCTCTGTTAGCAGTGCAGAGACAGAGGCTGTACTAGTGCGttatgaatgtgtgtatttaggtgtgtgtgtctgtgcattaaTCTAGGTGGGGGTGTGGAGGAGGCGGTACCTGGAAGTAGGCGCTCTCGCACAGCGTGTCGTGGCAGATGTCCAGGTGCCCCCCCACCGGCCTGTCCTGCGCGGCAGACGCACTGTCCTCACTGGGCGTGCTCAGCTGCCAGCCCTGGGAGAAGGCGTGCAGGTAATGCACCGCCACCGTCCAGAACTGCAGCTCCGACTCGTCCCCGAAAAGCCTGCGCACGAGACACAACACTGTAAACCTCACACGAGAAGCCAGAGCAGCATTTTCACACATGCCTACACCTCTCATCTTGTGTGTTAATGTCACCCTGTTCAGCGAATCATCTGTTATTAAACAGTACTCAGTTACCGGCGACGGTTCGGGGCACTTGAATGCTGGTGGTGCCAGTTTCACAGGAGGTCCGACTGTTTTTAAAAGTCTCGTTATGTTTAACCAGGATGGAAACACAACACCGATTGGCTGCTGTAGGTCAGTTACGCAGATTCTGCACCGAAACATTTAAGACGAAGAAAAAGGGGGTTGATTGTTAATTGTAACTACAATAAATGTGTGCGTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173984 lncRNA upstream 2574 483833 ~ 488667 (+) True G138325
TU173982 lncRNA upstream 7639 483224 ~ 483602 (+) True G138323
TU173981 lncRNA upstream 12785 478236 ~ 478456 (+) True G138322
TU173980 lncRNA upstream 63127 427788 ~ 428114 (+) True G138321
TU173939 lncRNA upstream 204414 286551 ~ 286827 (+) True G138293
TU173987 lncRNA downstream 1702 494066 ~ 494304 (+) True G138328
TU173988 lncRNA downstream 2095 494459 ~ 494798 (+) True G138329
TU173991 lncRNA downstream 13994 506358 ~ 506710 (+) True G138332
TU173992 lncRNA downstream 14434 506798 ~ 507401 (+) True G138333
TU173993 lncRNA downstream 17505 509869 ~ 510688 (+) True G138334
AMCG00002730 mRNA upstream 108811 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 188977 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 214450 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 306560 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 344541 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 207956 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 225766 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 243970 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 284226 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 337065 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 402464 894828 ~ 898423 (+) True G138387
TU174076 other downstream 418746 911110 ~ 913532 (+) True G138394
TU174081 other downstream 434105 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 434105 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 596914 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile