RNA id: TU173988


Basic Information

Item Value
RNA id TU173988
length 340
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G138329
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 494459 ~ 494798 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTCCTTGGTGTCCCAGACCTCGGCCCCATCATTGTACATGACCAGCAGCTTCTGGTTGCCCTTCCCCGGGGCGAACCGGATCTTCTTCACCCAGCCACGGTGCGTGGGGATCCCCCTGCAAGCAGCAGGAGAGGTGGAGATGTATAGAGAGGTGGATATAGATTCATATTTCTGCAGAACCTGACACAGCTGTGCAGGAAGAGCCTGACTTCAGGGGGGGCCTCTGCGCACCTGGACAGCCTAGCCTTCAGATCCCAGAAGTTCAGGTTCCCGTCCACGTCGCCCAGCACCAGGGTGTCTCCCTTCCACGCGATGCAGGCCATGCTGCCCATACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173987 lncRNA upstream 155 494066 ~ 494304 (+) True G138328
TU173986 lncRNA upstream 2095 491241 ~ 492364 (+) True G138327
TU173984 lncRNA upstream 5792 483833 ~ 488667 (+) True G138325
TU173982 lncRNA upstream 10857 483224 ~ 483602 (+) True G138323
TU173981 lncRNA upstream 16003 478236 ~ 478456 (+) True G138322
TU173991 lncRNA downstream 11560 506358 ~ 506710 (+) True G138332
TU173992 lncRNA downstream 12000 506798 ~ 507401 (+) True G138333
TU173993 lncRNA downstream 15071 509869 ~ 510688 (+) True G138334
TU174003 lncRNA downstream 110917 605715 ~ 605927 (+) True G138343
TU174004 lncRNA downstream 153795 648593 ~ 649012 (+) True G138344
AMCG00002730 mRNA upstream 112029 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 192195 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 217668 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 309778 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 347759 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 205522 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 223332 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 241536 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 281792 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 334631 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 400030 894828 ~ 898423 (+) True G138387
TU174076 other downstream 416312 911110 ~ 913532 (+) True G138394
TU174081 other downstream 431671 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 431671 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 594480 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile