RNA id: TU174004


Basic Information

Item Value
RNA id TU174004
length 420
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G138344
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 648593 ~ 649012 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaagggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccgggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcagaaacagactggataggatccttgatcacttagttattaatggacaccaaacgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174003 lncRNA upstream 42666 605715 ~ 605927 (+) True G138343
TU173993 lncRNA upstream 137905 509869 ~ 510688 (+) True G138334
TU173992 lncRNA upstream 141192 506798 ~ 507401 (+) True G138333
TU173991 lncRNA upstream 141883 506358 ~ 506710 (+) True G138332
TU173988 lncRNA upstream 153795 494459 ~ 494798 (+) True G138329
TU174017 lncRNA downstream 111702 760714 ~ 762195 (+) True G138356
TU174040 lncRNA downstream 159044 808056 ~ 808613 (+) True G138375
TU174041 lncRNA downstream 159884 808896 ~ 810889 (+) True G138376
TU174044 lncRNA downstream 164281 813293 ~ 821565 (+) True G138378
TU174048 lncRNA downstream 170314 819326 ~ 841728 (+) False G138379
AMCG00002730 mRNA upstream 266163 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 346329 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 371802 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 463912 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 501893 137527 ~ 146700 (+) True AMCG00002720
AMCG00002739 mRNA downstream 51308 700320 ~ 707201 (+) True AMCG00002739
AMCG00002736 mRNA downstream 69118 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 87322 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 127578 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 180417 829429 ~ 836163 (+) True AMCG00002740
TU174062 other downstream 245816 894828 ~ 898423 (+) True G138387
TU174076 other downstream 262098 911110 ~ 913532 (+) True G138394
TU174081 other downstream 277457 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 277457 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 440266 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile