RNA id: TU174017


Basic Information

Item Value
RNA id TU174017
length 1333
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G138356
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 760714 ~ 762195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAATGACAGAACACAGGGCTTAGAAACGTTATAGCTAGTTTATTTTGTGCAACAGTCGAgatgtatatacaaaatatagacAATAAAAATATTCACTTATTTTATAGAACATTTGAAAGAATTAACTTTACATTTCTTGCAGCATCTATAGCTCCACACAGACCGATGCAAAGATGAGCCAGTCGTCAAGATCACACTCActcccctccctctcactcacacacatacacacacacacagatggtctctcacacacacacacacacacacactgcactctcTCCCTCGCAGCCCTGCAGGGCTGCGACACACAACTCACACGATCGCTTTAAAGTCCCCACATTCACTCACAATAAGGTAACAATCTTGAAGAATGTCAAACATACCCCCCCTCACTGGACCTGGTCCCACCCCCCTATAAGGCACTATTAATCTGGTTTAGCGTGTGCAGGTCGGAGCCCCCACTCAGGTTTGAGGACTGACGTGTCCTGTAACGCACAGCCTGCTACACACTCAGGCTTGGTTTAAcataagcaattaaaaacactaaaagaTATATGCATGCATGGATGTATATAAgcatatacatttaacaaacaaaatatatctatatatttatattaaaacaattgtaaaatgtgtagGAGAAGGCAGCTGGTGACAGAGAGCGGACCCCTGGTCAGACCCCAGAGAGTGCAGAACTAGGGCAGGACGCCCAAGCCCTTGtcttaactgtgtgtgtgtgtgtgtgtgtgtgtgacagtgtgtgtgtgttggtgcatgtgtgagagtgtgtctttgtgtgtgacAGTGCGTGTGCGTTTGGCACAGGGAGTTTCTCACACTCTGCCAGCCGGGGGCCCAGTGCAGGGCAGACGTTGCCTGGGTGTTTCCAGTGTTCCCACTGCAGCAGAGTTGTTTAGGTGTGGCCCCTGTCTGTCCTGGGCTGGTGCTGTAGTGGGGAGCAGTGCTCCTGCTGTCGAAGTTAACAGTGaaaggcaggagagagagaggagcaagGAACCTGCCTTGAGTCCTGCACTGGGCAGGCTGAGGACAGGGTCTGTGTGTGGGTGactatatacagacacacacacacacacacacacacaaggaataCTTGCAAAGTCTGTTTAAAGAGATCCGTGCGCCCATGGAAGTGAGTTGGGCACCGTGTTTGATCCAGTCGTCCTCATGACGTGAATTCAGCCAGGAGTGTGTCGCCACCTCGCCAGCTATACTTTAAGGAGGTCCGGAGACTCAGGAATGGGATCTGAAAGACAAGAACAGGAACTGGAATGTTGATCGGTCGACCAATCAGGATGGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174004 lncRNA upstream 111702 648593 ~ 649012 (+) True G138344
TU174003 lncRNA upstream 154787 605715 ~ 605927 (+) True G138343
TU173993 lncRNA upstream 250026 509869 ~ 510688 (+) True G138334
TU173992 lncRNA upstream 253313 506798 ~ 507401 (+) True G138333
TU173991 lncRNA upstream 254004 506358 ~ 506710 (+) True G138332
TU174040 lncRNA downstream 45861 808056 ~ 808613 (+) True G138375
TU174041 lncRNA downstream 46701 808896 ~ 810889 (+) True G138376
TU174044 lncRNA downstream 51098 813293 ~ 821565 (+) True G138378
TU174048 lncRNA downstream 57131 819326 ~ 841728 (+) False G138379
TU174047 lncRNA downstream 75014 837209 ~ 841728 (+) True G138379
AMCG00002735 mRNA upstream 507 736334 ~ 760207 (+) True AMCG00002735
AMCG00002736 mRNA upstream 32227 718130 ~ 728487 (+) True AMCG00002736
AMCG00002739 mRNA upstream 53513 700320 ~ 707201 (+) True AMCG00002739
AMCG00002730 mRNA upstream 378284 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 458450 301750 ~ 302264 (+) True AMCG00002729
AMCG00002741 mRNA downstream 14395 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 67234 829429 ~ 836163 (+) True AMCG00002740
AMCG00002747 mRNA downstream 128480 890675 ~ 893192 (+) True AMCG00002747
AMCG00002746 mRNA downstream 137628 899823 ~ 904354 (+) True AMCG00002746
AMCG00002748 mRNA downstream 163036 925231 ~ 930598 (+) False AMCG00002748
TU174062 other downstream 132633 894828 ~ 898423 (+) True G138387
TU174076 other downstream 148915 911110 ~ 913532 (+) True G138394
TU174081 other downstream 164274 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 164274 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 327083 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile