RNA id: TU174034


Basic Information

Item Value
RNA id TU174034
length 554
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G138371
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 801214 ~ 801767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttttattataacAGACCATCCAacaaaattcacaataaatatCCCAGagccataaaaaaaatacaaaaaccaaaacaaaccaaagaaaatcaaatacaaaatgacagccgcacacgcacacgccaGTTGCTTTAAGAAAACGAAAGGGATGAATGTAAATGAACCGAAGCCTGATAAGCCACTTGCACCCTCGTTTTGGTAAATCAGCATTTCGtcaaaaaaatattcatttgaGAACAtaattagattgttttaaaaaaggacaCGTCCTCAGGCCGTGGCAGTGTTCATTCCGTGGAGACCCCCGTCCCCGCAGCGCCCCACCCGGCCCGCTCGTCTCCGTCCCGGGACGCCCGCTGGCAGTCGGCGCTGGGACGAGTCTCTGATGTCTCGGTTGTCCACCCCTCCATTATCAGACATTTAAACAGGACGGACgtattttaaacagatgtgGACAGAAGGGACGCTGCCCTTGTGCATCGGTCCCGCGGCGTCAGTCCCCAGTGGAGAGAGACGGCGCTCGGGAAGGAGGACCAAGAATCTCTGTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174012 lncRNA downstream 52745 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 317611 483224 ~ 483603 (-) True G138324
TU173960 lncRNA downstream 415610 302082 ~ 385604 (-) False G138303
TU174037 lncRNA upstream 1806 803573 ~ 805155 (-) True G138373
TU174099 lncRNA upstream 3993 805760 ~ 807058 (-) False AMCG00002743
TU174126 lncRNA upstream 93245 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 93245 895012 ~ 898417 (-) True G138430
TU174129 lncRNA upstream 93245 895012 ~ 898417 (-) False G138430
AMCG00002738 mRNA downstream 32391 763129 ~ 768823 (-) True AMCG00002738
AMCG00002737 mRNA downstream 50184 750635 ~ 751030 (-) True AMCG00002737
AMCG00002733 mRNA downstream 221250 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 287827 485836 ~ 513387 (-) True AMCG00002732
AMCG00002734 mRNA downstream 316914 483902 ~ 484300 (-) True AMCG00002734
AMCG00002743 mRNA upstream 5051 806818 ~ 816761 (-) True AMCG00002743
AMCG00002742 mRNA upstream 27040 828807 ~ 829169 (-) True AMCG00002742
AMCG00002745 mRNA upstream 39491 841258 ~ 843720 (-) True AMCG00002745
AMCG00002744 mRNA upstream 44796 846563 ~ 853730 (-) True AMCG00002744
AMCG00002750 mRNA upstream 102688 904455 ~ 907446 (-) True AMCG00002750
TU173921 other downstream 611956 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 654374 144926 ~ 146840 (-) True G138245
TU174098 other upstream 6388 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 10978 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 121243 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 121243 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 121243 923010 ~ 925398 (-) False AMCG00002752

Expression Profile